Evidence map›Paper›PMID 40937526›Full record

ArticleThe New phytologist2025

A circadian transcriptional subnetwork and EARLY FLOWERING 3 control timing of senescence and grain nutrition in bread wheat.

Christopher R Buckley, Joshua M Boyte, Yalin Liu, Robert L Albiston, Jessica Hyles, Jesse T Beasley, Alexander A T Johnson, Ben Trevaskis, Alexandre Fournier-Level, Michael J Haydon

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christopher R BuckleySchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0000-0002-4095-2300
Joshua M BoyteSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0009-0005-7495-5058
Yalin LiuSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0009-0006-4330-8939
Robert L AlbistonSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.
Jessica HylesCSIRO, Agriculture and Food, GPO Box 1700, Canberra, ACT, 2601, Australia.ORCID https://orcid.org/0000-0002-1836-4334
Jesse T BeasleySchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0000-0001-7116-3622
Alexander A T JohnsonSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0000-0002-1209-6447
Ben TrevaskisCSIRO, Agriculture and Food, GPO Box 1700, Canberra, ACT, 2601, Australia.ORCID https://orcid.org/0000-0001-7277-4994
Alexandre Fournier-LevelSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0000-0002-6047-7164
Michael J HaydonSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia.ORCID https://orcid.org/0000-0003-2486-9387

Funding

Faculty of Science, University of MelbourneGrains Research and Development Corporation CSP00183
6 · The paper itself

Abstract

Circadian clocks control daily and seasonal timing of physiology and development. Because of their influence on photoperiodic flowering, variants in circadian clock genes have been selected for phenology during domestication of cereal crops. To explore the potential impact of this genetic variation on circadian-regulated traits, we investigated the relationship between the circadian clock and leaf senescence in hexaploid bread wheat. We phenotyped a collection of elite wheat cultivars for circadian rhythms, senescence and grain nutrition and used genotypes of multiple circadian clock genes to assign cultivars to circadian multilocus genotypes (MLGs). We compared the circadian-regulated transcriptomes in mature and senescent leaves by RNA sequencing and used near-isogenic lines (NILs) of a deletion in EARLY FLOWERING 3-D1 (ELF3-D1), a known phenology locus, to test for a functional contribution to the timing of senescence and grain protein content (GPC). We detected variation in circadian rhythms between wheat cultivars, which was significantly associated with the timing of senescence. We revealed substantial reorganisation of the circadian-regulated transcriptome during senescence and identified a transcriptional subnetwork representing a link between the circadian oscillator and regulators of leaf senescence. NILs of an ELF3-D1 deletion confirmed a significant effect on the timing of senescence and GPC. Our results demonstrate an important role for the circadian clock in controlling the timing of senescence in wheat, which highlights potential consequences of circadian clock genes selected for phenology on other valuable crop traits.

Indexed as

BreadCircadian ClocksCircadian RhythmEdible GrainGene Regulatory NetworksPlant SenescenceTranscription, GeneticTriticumFlowersGene Expression Regulation, PlantGenes, PlantGenotypePhenotypePlant LeavesPlant ProteinsTime FactorsPlant Proteinscircadian clockGPCgrain nutritionleaf senescencemultilocus genotypeOzWheatTriticum aestivum

Identifiers

PMID40937526
PMCPMC12529051

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.