Evidence map›Paper›PMID 40936734›Full record

ArticleProceedings. IEEE International Conference on Bioinformatics and Biomedicine2022

Semantic Annotation of NIH Funding Data for Supporting Rare Disease Research.

Szeling Hsu, Sue Qu, Yanji Xu, Qian Zhu

Abstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Synonym Augmentation for Rare Disease Identification in Unstructured Data.medRxiv : the preprint server for health sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Szeling HsuDivision of Rare Diseases Research Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), Bethesda, USA.
Sue QuDivision of Rare Diseases Research Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), Bethesda, USA.
Yanji XuDivision of Rare Diseases Research Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), Bethesda, USA.
Qian ZhuDivision of Preclinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), Rockville, USA.

Funding

Informatics Research CoreZIATR000410 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MATHE, EWY · 2020 to 2020
$595k
Intramural NIH HHS Z99 TR999999Intramural NIH HHS ZIA TR000410
6 · The paper itself

Abstract

With the advances in science and technology, the number of research in rare diseases has dramatically increased over the past twenty years. Systematically accessing those research projects funded by NIH would allow us to assess the current status of research, and research gaps remain in this area. Consequently, new research might be inspired to bridge the gaps. We previously developed a knowledge graph to semantically represent NIH funded rare disease research projects by analyzing project titles. To expand the use of NIH funding data, in this study we extended the previous work in two folds, 1) we applied our self-developed NLP package named NormMap to identify rare disease related projects, 2) we semantically annotated project titles and abstracts with biomedical concepts in UMLS to illustrate the project aims. With such rich information extracted from NIH funding data via semantic annotation, an updated version of the knowledge graph will be developed to advance rare disease research as the next step.

Indexed as

Natural Language ProcessingNIH funded projectsRare diseasescispaCySemantic annotation

Identifiers

PMID40936734
PMCPMC12422726

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.