Evidence map›Paper›PMID 40935896›Full record

ArticleNature chemical biology2026

Real-time imaging of protein microenvironment changes in cells with rotor-based fluorescent amino acids.

Shudan Yang, Shikai Jin, Mengxi Zhang, Yuda Chen, Yiming Guo, Yu Hu, Peter G Wolynes, Han Xiao

Abstract read
In one paragraph

Article in Nature chemical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Real-Time Detection of Burn Wound Infection via a Turn-On NIR-II Fluorescent Probe.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Sweetening ferroptosis spread.Nature chemical biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shudan Yang *Department of Chemistry, Rice University, Houston, TX, USA.
Shikai Jin *Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.ORCID 0000-0001-9525-4166
Mengxi Zhang *Department of Chemistry, Rice University, Houston, TX, USA.
Yuda ChenDepartment of Chemistry, Rice University, Houston, TX, USA.
Yiming GuoDepartment of Chemistry, Rice University, Houston, TX, USA.
Yu HuDepartment of Chemistry, Rice University, Houston, TX, USA.ORCID 0009-0007-2217-1459
Peter G WolynesDepartment of Chemistry, Rice University, Houston, TX, USA.
Han XiaoDepartment of Chemistry, Rice University, Houston, TX, USA. han.xiao@rice.edu.ORCID 0000-0002-4311-971X

Funding

Targeting Siglec-9/Sialoglycan Interactions to Enhance NK Functions During HIV InfectionR01AI165079 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, XIAO, HAN · 2021 to 2025
$3.1M
Engineering Proteins with Noncanonical Amino AcidsR35GM133706 · NIGMS · RICE UNIVERSITY · PI Han Xiao · 2019 to 2026
$2.9M
Modulation of Epigenetic Target in the Bone to Treat Breast Cancer MetastasisR01CA277838 · NCI · RICE UNIVERSITY · PI Han Xiao, Xiang Zhang · 2023 to 2026
$2.6M
NCI NIH HHS R01 CA277838NIAID NIH HHS R01 AI165079NIGMS NIH HHS R35 GM133706United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) HT9425-23-1-0494United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) HT9425-25-1-0021United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) W81XWH-21-1-0789U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01-AI165079U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35-GM133706Welch Foundation C-0016
6 · The paper itself

Abstract

Fluorescent protein fusions with environmentally sensitive fluorophores have been widely used to investigate changes in the protein microenvironment. Unfortunately, these techniques often rely on bulky fluorescent proteins or tags to the N terminus or C terminus of the target protein, which can disrupt the behavior of the target protein and may limit their ability to investigate microenvironment changes with high spatial resolution. Here we develop a strategy to visualize microenvironment changes of protein substructures in real time by genetically incorporating environment-sensitive noncanonical amino acids (ncAAs) containing rotor-based fluorophores at specific positions of the target protein. Through computational redesign of aminoacyl-tRNA synthetase, we successfully incorporated these rotor-based ncAAs into several proteins in mammalian cells. Precise placement of these ncAAs at specific sites of proteins enables the detection of microenvironmental changes around individual residues during events such as aggregation, clustering, cluster dissociation and others.

Indexed as

Amino AcidsFluorescent DyesProteinsAmino Acyl-tRNA SynthetasesAnimalsHumansAmino AcidsAmino Acyl-tRNA SynthetasesFluorescent DyesProteins

Identifiers

PMID40935896
PMCPMC13110126

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.