Evidence map›Paper›PMID 40932881›Full record

ArticleProceedings. IEEE International Conference on Bioinformatics and Biomedicine2021

Data Normalization Improves Semantic Annotation - a Case Study of Rare Disease Name Annotation.

Charlie Tang, Yanji Xu, Qian Zhu

Abstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Integrative Rare Disease Profile Creation via NormMap to Advance Rare Disease Research.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
  2. Semantic Annotation of NIH Funding Data for Supporting Rare Disease Research.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Charlie TangAxle Informatics, LLC, Rockville, USA.
Yanji XuOffice of Rare Disease Research, National Center for Advancing Translational Sciences, Bethesda, USA.
Qian ZhuDivision of Pre-Clinical Innovation, National Center for Advancing Translational Sciences, Rockville, USA.

Funding

Intramural NIH HHS Z99 TR999999
6 · The paper itself

Abstract

Despite the individually low prevalence of rare diseases, they collectively constitute a big challenge to human health. Accurate annotation of rare diseases in biomedical data through natural language processing (NLP) could be instrumental in biomedical informatics research. Herein, we propose a data normalization-based annotation approach, complementary to the popular biomedical data annotation tool named MetaMap, for disease annotation from biomedical data in free text.

Indexed as

data normalizationRare diseasesemantic annotation

Identifiers

PMID40932881
PMCPMC12419296

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.