Evidence map›Paper›PMID 40932660›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2025

Molecular Chain Elongation Mechanism for n-Caproate Biosynthesis by Megasphaera Hexanoica.

Byoung Seung Jeon, Eun-Jung Kim, Hogyun Seo, Hyunjin Kim, Seungjin Shin, Caroline Schlaiß, Largus T Angenent, Kyung-Jin Kim, Byoung-In Sang

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Molecular Chain Elongation Mechanism for n-Caproate Biosynthesis by Megasphaera Hexanoica.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Byoung Seung JeonKorea Institute of Ceramic Engineering and Technology, Osong, 28160, Republic of Korea.
Eun-Jung KimSchool of Life Sciences, KNU Creative BioResearch Group, KNU Institute for Microorganisms, Kyungpook National University, Daegu, 41566, Republic of Korea.
Hogyun SeoSchool of Life Sciences, KNU Creative BioResearch Group, KNU Institute for Microorganisms, Kyungpook National University, Daegu, 41566, Republic of Korea.
Hyunjin KimDepartment of Biological and Chemical Engineering, Aarhus University, Gustav Wieds vej 10D, Aarhus C, 8000, Denmark.
Seungjin ShinDepartment of Chemical Engineering, Hanyang University, Seoul, 04763, Republic of Korea.
Caroline SchlaißAG Angenent, Max Planck Institute for Biology, Max Planck Ring 5, D-72076, Tübingen, Germany.
Largus T AngenentAG Angenent, Max Planck Institute for Biology, Max Planck Ring 5, D-72076, Tübingen, Germany.
Kyung-Jin KimSchool of Life Sciences, KNU Creative BioResearch Group, KNU Institute for Microorganisms, Kyungpook National University, Daegu, 41566, Republic of Korea.
Byoung-In SangDepartment of Chemical Engineering, Hanyang University, Seoul, 04763, Republic of Korea.ORCID https://orcid.org/0000-0001-7972-6709

Funding

Korea Institute of Ceramic Engineering and Technology 2025-2410003749Novo Nordisk Foundation Center for Basic Metabolic Research NNF21SA0072700
6 · The paper itself

Abstract

The microbial production of medium-chain carboxylates has attracted considerable interest owing to their potential applications in biofuels and specialty chemicals; however, the underlying biosynthetic mechanisms remain incompletely understood. The present study evaluates the medium-chain carboxylate-producing microbe Megaspahera hexanoica using genomic analysis, transcriptome analysis, and metabolic engineering. Additionally, the n-caproate synthesis pathway of M. hexanoica is characterized with fructose as an electron donor, and the substrate specificity of the respective proteins is evaluated by constructing an n-caproate biosynthetic pathway in Escherichia coli. Among all r-BOX or RBO genes, thl_1583, which encodes β-ketothiolase (MhTHL), is identified as the most critical enzyme for the carbon chain elongation mechanism in M. hexanoica. Therefore, MhTHL is compared with other well-studied β-ketothiolases (CkTHL from Clostridium kluyveri, ReBktB from Ralstonia eutropha (Cupriavidus necator), EcAtoB from E. coli, and CaTHL from C. acetobutylicum). MhTHL is found to exhibit the highest n-caproate production, as evidenced by the protein crystal structure of MhTHL. Structural comparisons with other thiolases show that MhTHL has a larger substrate-binding pocket than ReBktB. Thiolase mutants generated by site-directed mutagenesis reveal that two residues (Leu87 and Val351) are essential for determining the size of the substrate-binding pocket.

Indexed as

CaproatesMegasphaeraBacterial ProteinsBiosynthetic PathwaysEscherichia coliMetabolic EngineeringBacterial ProteinsCaproateshexanoic acidChain elongation mechanismMedium‐chain carboxylatesMegasphaera hexanoican‐Caproate biosynthesisProtein structure analysisSite‐directed mutagenesisβ‐Ketothiolase

Identifiers

PMID40932660
PMCPMC12667485

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.