Evidence map›Paper›PMID 40931354›Full record

ArticleJournal of biomedical science2025

PPM1D is directly degraded by proteasomes in a ubiquitination-independent manner through its carboxyl-terminal region.

Masaki Takahashi, Takeshi Kondo, Shogo Kimura, Akira Nakazono, Shusei Yoshida, Takeshi Wada, Masashi Watanabe, Shigetsugu Hatakeyama

Abstract read
In one paragraph

Article in Journal of biomedical science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Masaki TakahashiDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Takeshi KondoDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Shogo KimuraDepartment of Otolaryngology-Head and Neck Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Akira NakazonoDepartment of Otolaryngology-Head and Neck Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Shusei YoshidaDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Takeshi WadaDivision of Acute and Critical Care Medicine, Department of Anaesthesiology and Critical Care Medicine, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Masashi WatanabeDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan. mawata@med.hokudai.ac.jp.ORCID http://orcid.org/0000-0001-9697-1810
Shigetsugu HatakeyamaDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Japan. hatas@med.hokudai.ac.jp.

Funding

Japan Society for the Promotion of Science 19K22408Japan Society for the Promotion of Science 21H02690Japan Society for the Promotion of Science 24H01877Japan Society for the Promotion of Science 24K02235
6 · The paper itself

Abstract

backgroundPPM1D (protein phosphatase Mg

methodsPPM1D stability and degradation pathways were examined using cycloheximide chase assays in multiple cell lines. Proteasome and lysosome inhibitors were used to determine the degradation mechanism, while ubiquitination dependency was assessed using TAK-243, an E1 ubiquitin-activating enzyme inhibitor. In vitro degradation assays with purified 20S proteasome were performed to evaluate direct proteasomal degradation. Immunoprecipitation followed by mass spectrometry was performed to identify proteasomal regulators of PPM1D, with their functional roles validated through knockdown experiments. Finally, cell viability assays were conducted to assess the therapeutic potential of combined proteasome and PPM1D inhibition.

resultsCycloheximide chase assays demonstrated that wild-type PPM1D is a short-lived protein, whereas a C-terminal truncation mutant exhibits increased stability. PPM1D undergoes rapid, ubiquitin-independent proteasomal degradation via its C-terminal 35 amino acid residues. Additionally, the region spanning residues 450-501 is necessary for ubiquitination-mediated suppression of the ubiquitin-independent degradation pathway. We also found that PPM1D is directly degraded by the 20S proteasome, with the regulatory proteasome subunits PSMD14 and PSME3 acting as activators in this process. Proteasome inhibition resulted in PPM1D accumulation, potentially reducing therapeutic efficacy. Combined proteasome and PPM1D inhibition synergistically enhanced the antitumor effect.

conclusionsThe rapid degradation of the cancer driver PPM1D is achieved through direct recognition by the proteasome, and proteasome inhibitors may reduce therapeutic efficacy due to the accumulation of PPM1D. PPM1D may serve as a suitable model substrate for elucidating the mechanism of ubiquitin-independent proteasomal degradation and represents a potential novel therapeutic target for cancer treatment based on proteasome inhibition.

Indexed as

Proteasome Endopeptidase ComplexProtein Phosphatase 2CProteolysisUbiquitinationCell Line, TumorHumansPPM1D protein, humanProteasome Endopeptidase ComplexProtein Phosphatase 2CBortezomibGSK2830371PPM1DProteasomePSMD14PSME3UbInPD

Identifiers

PMID40931354
PMCPMC12424213

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.