Evidence map›Paper›PMID 40931350›Full record

ArticleGenome biology2025

MAGdb: a comprehensive high quality MAGs repository for exploring microbial metagenome-assemble genomes.

Guo Ye, Hao Hong, Ting Li, Jin Li, Jia-Qi Wu, Shuai Jiang, Zhi-Tong Meng, He-Tian Yuan, Wen Xue, Ai-Ling Li and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Metagenomic next-generation sequencing: new horizons in microbiology.Frontiers in cellular and infection microbiology · 2026
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Guo YeInstitute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang, Hangzhou, 310029, China.
Hao HongNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Ting LiNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Jin LiNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Jia-Qi WuNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Shuai JiangNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Zhi-Tong MengSchool of Computer and Artificial Intelligence, Zhengzhou University, Henan, Zhengzhou, 450001, China.
He-Tian YuanNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Wen XueNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China.
Ai-Ling LiInstitute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang, Hangzhou, 310029, China.
Tao ZhouInstitute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang, Hangzhou, 310029, China.
Ting-Ting LiNanhu Laboratory, State Key Laboratory of Biomedical Analysis (SKLBA), Beijing, 100850, China. tingtingli@xmail.ncba.ac.cn.
Tao LiInstitute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang, Hangzhou, 310029, China. tli@ncba.ac.cn.

Funding

China National Natural Science Foundation No. 32100421China National Natural Science Foundation No. 82130052China National Natural Science Foundation No. 82341098Nanhu Laboratory No. NSS2021CI05002The Central Government Guides Local Science and Technology Development Fund Projects No. 2024ZYYDSA400333
6 · The paper itself

Abstract

Metagenomic analyses of microbial communities have unveiled a substantial level of interspecies and intraspecies genetic diversity by reconstructing metagenome-assembled genomes (MAGs). The MAG database (MAGdb) boasts an impressive collection of 74 representative research papers, spanning clinical, environmental, and animal categories and comprising 13,702 paired-end run accessions of metagenomic sequencing and 99,672 high quality MAGs with manually curated metadata. MAGdb provides a user-friendly interface that users can browse, search, and download MAGs and their corresponding metadata information. It represents a valuable resource for researchers in discovering potential novel microbial lineages and understanding their ecological roles. MAGdb is publicly available at https://magdb.nanhulab.ac.cn/ .

Indexed as

Databases, GeneticMetagenomeMetagenomicsMicrobiotaDatabaseGenome sequencingMetagenomeMetagenome-assembled genomesMicrobiome

Identifiers

PMID40931350
PMCPMC12421750

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.