Evidence map›Paper›PMID 40929087›Full record

ArticleBioinformatics (Oxford, England)2025

High-dimensional causal mediation analysis by partial sum statistic and sample splitting strategy in imaging genetics application.

Hung-Ching Chang, Yusi Fang, Michael T Gorczyca, Kayhan Batmanghelich, George C Tseng

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Hung-Ching ChangDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261, United States.
Yusi FangDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261, United States.
Michael T GorczycaDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261, United States.ORCID 0000-0003-4790-4675
Kayhan BatmanghelichDepartment of Electrical and Computer Engineering, Boston University, Boston, MA 02215, United States.
George C TsengDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261, United States.ORCID 0000-0002-5447-1014

Funding

Integrating Multi-Modal Data and Biomechanics in COPD: Toward Robust and Interpretable Biomarkers for Disease Subtyping and ProgressionR01HL141813 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Kayhan Batmanghelich · 2018 to 2026
$4.2M
Disease subtyping guided by clinical phenotype for precision medicineR01LM014142 · NLM · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI George C. Tseng · 2023 to 2026
$1.2M
Single-cell congruence evaluation and selection of cancer models towards precision medicineR01CA285337 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Adrian V Lee, George C. Tseng · 2025 to 2026
$1.2M
Commonwealth Universal Research Enhancement (CURE)NCI NIH HHS R01 CA285337NHLBI NIH HHS R01 HL141813NIH HHS R01CA285337NIH HHS R01LM014142NLM NIH HHS R01 LM014142Pennsylvania Department of Health
6 · The paper itself

Abstract

summaryCausal mediation analysis investigates the role of mediators in the relationship between exposure and outcome. In the analysis of omics or imaging data, mediators are often high-dimensional, presenting challenges such as multicollinearity and interpretability. Existing methods either compromise interpretability or fail to effectively prioritize mediators. To address these challenges and advance causal mediation analysis in high-dimensional contexts, we propose the Partial Sum Statistic and Sample Splitting Strategy (PS5) framework. Through extensive simulations, we demonstrate that PS5 offers superior type I error control, higher statistical power, reduced bias in mediation effect estimation, and more accurate mediator selection. We apply PS5 to an imaging genetics dataset of chronic obstructive pulmonary disease (COPD) patients from the COPDGene study. The results show successful estimation of the global indirect effect and identification of mediating image regions. Notably, we identify a region in the lower lobe of the lung that exhibits a strong and concordant mediation effect for both genetic and environmental exposures, suggesting potential targets for treatment to mitigate COPD severity caused by genetic and smoking effects. AVAILABILITY AND IMPLEMENTATION: PS5 is publicly available at https://github.com/hung-ching-chang/PS5Med.

Indexed as

Computational BiologyMediation AnalysisPulmonary Disease, Chronic ObstructiveAlgorithmsHumans

Identifiers

PMID40929087
PMCPMC12502916

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.