Evidence map›Paper›PMID 40928332›Full record

ArticleJournal of chemical theory and computation2025

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations.

Sascha Mausenberger, Severin Polonius, Sebastian Mai, Leticia González

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sascha MausenbergerInstitute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.
Severin PoloniusInstitute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.ORCID 0000-0003-0445-4694
Sebastian MaiInstitute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.ORCID 0000-0001-5327-8880
Leticia GonzálezInstitute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.ORCID 0000-0001-5112-794X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. This framework streamlines the development of new interfaces by providing a reusable and extendable code base. It supports the computation of energies, gradients, various couplings─like spin-orbit couplings, nonadiabatic couplings, and transition dipole moments─and other properties for an arbitrary number of states with any multiplicities and charges. A key innovation within this framework is the introduction of hybrid interfaces, which can use other interfaces in a general hierarchical manner. Hybrid interfaces are capable of using one or more child interfaces to implement multiscale approaches, such as quantum mechanics/molecular mechanics where different child interfaces are assigned to different regions of a system. The concept of hybrid interfaces can be extended through nesting, where hybrid parent interfaces use hybrid child interfaces to easily setup complex workflows without the need for additional coding. We demonstrate the versatility of hybrid interfaces with two examples: one at the method level and one at the workflow level. The first example showcases the numerical differentiation of wave function overlaps, implemented as a hybrid interface and used to optimize a minimum-energy conical intersection with numerical nonadiabatic couplings. The second example presents an adaptive learning workflow, where nested hybrid interfaces are used to iteratively refine a machine learning model. This work lays the groundwork for more modular, flexible, and scalable software design in excited-state dynamics.

Identifiers

PMID40928332
PMCPMC12461921

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.