Evidence map›Paper›PMID 40924451›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

A genetically encoded nanobody sensor reveals conformational diversity in β-arrestins orchestrated by distinct seven transmembrane receptors.

Parishmita Sarma, Vendula Nagy Marková, Annu Dalal, Sudha Mishra, Nashrah Zaidi, Divyanshu Tiwari, Manish K Yadav, Nabarun Roy, Gargi Mahajan, Paul Miclea and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Parishmita Sarma *Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.ORCID 0000-0001-5519-7160
Vendula Nagy Marková *First Faculty of Medicine, Charles University in Prague, Prague 121 08, Czech Republic.ORCID 0009-0002-8808-3244
Annu DalalDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.
Sudha MishraDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.
Nashrah ZaidiDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.ORCID 0009-0002-2327-6942
Divyanshu TiwariDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.
Manish K YadavDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.
Nabarun RoyDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.ORCID 0009-0002-8449-7941
Gargi MahajanDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.ORCID 0009-0004-6779-253X
Paul MicleaFirst Faculty of Medicine, Charles University in Prague, Prague 121 08, Czech Republic.ORCID 0000-0002-3910-4574
Josef LazarFirst Faculty of Medicine, Charles University in Prague, Prague 121 08, Czech Republic.ORCID 0000-0002-6285-3995
Arun K ShuklaDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.ORCID 0000-0003-2910-8288

Funding

DBT-Wellcome Trust India Alliance IA/S/20/1/504916Department of Science and Technology, Ministry of Science and Technology, India (DST) File No. DST/INT/Czech/P-03/2019Wellcome Trust DBT India Alliance (India Alliance) IA/S/20/1/504916
6 · The paper itself

Abstract

Agonist-induced interaction of G protein-coupled receptors (GPCRs) with β-arrestins (βarrs) is a critical mechanism that regulates the spatiotemporal pattern of receptor localization and signaling. While the underlying mechanism governing GPCR-βarr interaction is primarily conserved and involves receptor activation and phosphorylation, there are several examples of receptor-specific fine-tuning of βarr-mediated functional outcomes. Considering the key contribution of conformational plasticity of βarrs in driving receptor-specific functional responses, it is important to develop novel sensors capable of reporting distinct βarr conformations in cellular context. Here, we design an intrabody version of a βarr-recognizing nanobody (nanobody32), referred to as intrabody32 (Ib32), in NanoLuc enzyme complementation assay format and measure its ability to recognize βarr1 and 2 in live cells upon activation of a broad set of GPCRs. Ib32 robustly recognizes activated βarr1 and 2 in the plasma membrane and endosomes, and effectively mirrors βarr recruitment profile upon stimulation of selected GPCRs. We also design an Ib32 sensor for polarization microscopy with a change in linear dichroism as readout and demonstrate its utility for monitoring βarr activation upon stimulation of selected GPCRs by natural and biased agonists. Taken together with a previously described sensor of βarr1 activation, Ib32 underscores the inherent flexibility encoded in βarrs and conformational diversity imparted by different GPCRs, which is further corroborated using an orthogonal limited proteolysis assay. Our study presents Ib32 as a sensor of βarr activation and highlights the structural diversity of βarrs, which likely allows their ability to interact with, and regulate, a large repertoire of GPCRs.

Indexed as

beta-ArrestinsReceptors, G-Protein-CoupledSingle-Domain AntibodiesBiosensing TechniquesCell MembraneHEK293 CellsHumansProtein ConformationSignal Transductionbeta-ArrestinsReceptors, G-Protein-CoupledSingle-Domain AntibodiesGPCRsintrabodiesnanobodiespolarization microscopyβ-arrestins

Identifiers

PMID40924451
PMCPMC12452856

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.