Evidence map›Paper›PMID 40923767›Full record

ArticleNucleic acids research2025

DDX6 interacts with DDX3X to repress translation in microRNA-mediated silencing.

Yanyan Lu, Meng Tao, Hong Su, Yiren Tu, Ji-Ping Wang, Masahiko Kuroda, Xiaozhong Wang

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yanyan LuDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, United States.
Meng TaoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, United States.
Hong SuDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, United States.
Yiren TuDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, United States.
Ji-Ping WangDepartment of Statistics and Data Science, Northwestern University, Evanston, IL 60208, United States.ORCID 0000-0002-8398-939X
Masahiko KurodaDepartment of Molecular Pathology, Tokyo Medical University, 6-1-1, Shinjuku, Shinjuku-ku 160-8402, Tokyo, Japan.
Xiaozhong WangDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, United States.ORCID 0000-0003-0219-0752

Funding

Optogenomic mapping of chromatin accessibility in live cellsR01GM149076 · NIGMS · NORTHWESTERN UNIVERSITY · PI WANG, XIAOZHONG ALEC · 2022 to 2025
$1.3M
RNA Ligation Pathways in Mammalian Unfolded Protein ResponseR01GM120307 · NIGMS · NORTHWESTERN UNIVERSITY · PI WANG, XIAOZHONG ALEC · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM120307NIGMS NIH HHS R01 GM149076NIH HHS R01GM120307NIH HHS R01GM149076
6 · The paper itself

Abstract

DDX6 is known to repress messenger RNA (mRNA) translation and promote mRNA decay in microRNA-mediated silencing. In embryonic stem cells (ESCs), DDX6 primarily functions at the translation level, independent of mRNA destabilization; however, the precise molecular mechanism of how DDX6 represses translation remains unclear. Here, we identify DDX3X as a key downstream target of DDX6-mediated translational repression in ESCs. Conditional knockout of DDX3X demonstrates its essential role in microRNA (miRNA) silencing. Biochemical analyses reveal that DDX6 directly binds to DDX3X, with the C-terminal region of DDX6 being necessary for this interaction. ESCs lacking DDX6 and rescued with a DDX6 mutant that is defective in DDX3X interaction continue to exhibit miRNA silencing defects. Furthermore, the mutant DDX6 is unable to inhibit 48S preinitiation complex formation in vitro. These findings uncover a novel mechanism in which DDX6 represses target mRNA translation via its interaction with DDX3X.

Indexed as

DEAD-box RNA HelicasesGene SilencingMicroRNAsProtein BiosynthesisProto-Oncogene ProteinsRNA InterferenceAnimalsEmbryonic Stem CellsHumansMiceMouse Embryonic Stem CellsProtein BindingRNA, MessengerDdx3x protein, mouseDdx6 protein, mouseDEAD-box RNA HelicasesMicroRNAsProto-Oncogene ProteinsRNA, Messenger

Identifiers

PMID40923767
PMCPMC12418388

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.