Evidence map›Paper›PMID 40921744›Full record

ArticleNature microbiology2025

Multigenerational proteolytic inactivation of restriction upon subtle genomic hypomethylation in Pseudomonas aeruginosa.

Esther Shmidov, Alexis Villani, Senén D Mendoza, Ellay Avihu, Ilana Lebenthal-Loinger, Sarit Karako-Lampert, Sivan Shoshani, Chang Ye, Yiding Wang, Hao Yan and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Bacteriophage genome-wide transposon mutagenesis.bioRxiv : the preprint server for biology · 2025
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Esther ShmidovThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
Alexis VillaniDepartment of Microbiology and Immunology, University of California, San Francisco, USA.
Senén D MendozaDepartment of Microbiology and Immunology, University of California, San Francisco, USA.ORCID http://orcid.org/0000-0001-8852-4148
Ellay AvihuThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
Ilana Lebenthal-LoingerThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
Sarit Karako-LampertThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
Sivan ShoshaniThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
Chang YeDepartment of Chemistry, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-0236-5671
Yiding WangCommittee on Genetics, Genomics and System Biology, University of Chicago, Chicago, IL, USA.
Hao YanDepartment of Chemistry, University of Chicago, Chicago, IL, USA.
Weixin TangCommittee on Genetics, Genomics and System Biology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-5739-5416
Joseph Bondy-DenomyDepartment of Microbiology and Immunology, University of California, San Francisco, USA. Joseph.bondy-denomy@ucsf.edu.ORCID http://orcid.org/0000-0002-4909-9481
Ehud BaninThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel. Ehud.banin@biu.ac.il.ORCID http://orcid.org/0000-0003-2974-5877

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Restriction-modification (R-M) systems protect against phage infection by detecting and degrading invading foreign DNA. However, like many prokaryotic anti-phage defences, R-M systems pose a major risk of autoimmunity, exacerbated by the presence of hundreds to thousands of potential cleavage sites in the bacterial genome. Pseudomonas aeruginosa strains experience the temporary inactivation of restriction endonucleases following growth at high temperatures, but the reason and mechanisms for this phenomenon are unknown. Here we report that P. aeruginosa type I restriction endonuclease is degraded and the methyltransferase is partially degraded, by two Lon-like proteases when replicating at >41 °C. This post-translational regulation prevents self-DNA targeting, which is a risk due to stable genomic hypomethylation, as demonstrated by single-molecule, real-time sequencing and TadA-assisted N

Indexed as

DNA MethylationDNA Restriction EnzymesGenome, BacterialPseudomonas aeruginosaBacterial ProteinsDNA, BacterialDNA Restriction-Modification EnzymesGene Expression Regulation, BacterialMethyltransferasesProteolysisBacterial ProteinsDNA, BacterialDNA Restriction EnzymesDNA Restriction-Modification EnzymesMethyltransferases

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.