Evidence map›Paper›PMID 40919953›Full record

ReviewJournal of bacteriology2025

Translational coupling of neighboring genes in prokaryotes.

Kerry M Brown, Joseph T Wade

Abstract readReview
In one paragraph

Review in Journal of bacteriology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Virulence · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kerry M BrownWadsworth Center, New York State Department of Health, Albany, New York, USA.ORCID 0000-0002-9147-8258
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, New York, USA.ORCID 0000-0002-9779-3160

Funding

Unexpected complexity in bacterial genomesR35GM144328 · NIGMS · WADSWORTH CENTER · PI Joseph Thomas Wade · 2022 to 2026
$2.6M
Systematic Discovery and Analysis of Small Proteins and Small ORFs in MycobacteriaR01GM139277 · NIGMS · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M, GRAY, TODD · 2020 to 2023
$2.2M
NIGMS NIH HHS R01 GM139277NIGMS NIH HHS R35 GM144328NIH HHS R01GM139277NIH HHS R35GM144328
6 · The paper itself

Abstract

Prokaryotic genomes are gene-dense, so genes in the same orientation are often separated by short intergenic sequences or even overlap. Many mechanisms of regulation depend on open reading frames (ORFs) being spatially close to one another. Here, we describe one such mechanism, translational coupling, where translation of one gene promotes translation of a co-oriented neighboring gene. Translational coupling has been observed across the prokaryotic kingdom. Coupling is most efficient when the intergenic distance between ORFs is small. Coupling efficiency is influenced by RNA secondary structure, the presence of a Shine-Dalgarno (SD) sequence, and potentially by other

Indexed as

BacteriaGene Expression Regulation, BacterialProkaryotic CellsProtein BiosynthesisNucleic Acid ConformationOpen Reading FramesRNA, BacterialRNA, Bacterialtranslationtranslational coupling

Identifiers

PMID40919953
PMCPMC12548453

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.