Evidence map›Paper›PMID 40919899›Full record

ArticleJournal of virology2025

Effect of increased CpG and UpA dinucleotides in the West Nile virus genome on virus transmission by

Joyce W M van Bree, Imke Visser, Eleanor M Marshall, Wessel W Willemsen, Carmen van de Waterbeemd, Dennis Kenbeek, Marleen H C Abma-Henkens, Gorben P Pijlman, Monique M van Oers, Barry Rockx and 1 more

Abstract read
In one paragraph

Article in Journal of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joyce W M van Bree *Laboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Imke Visser *Department of Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands.
Eleanor M MarshallDepartment of Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands.ORCID 0000-0002-1434-6438
Wessel W WillemsenLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Carmen van de WaterbeemdLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Dennis KenbeekLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Marleen H C Abma-HenkensLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Gorben P PijlmanLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.ORCID 0000-0001-9301-0408
Monique M van OersLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Barry RockxDepartment of Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands.
Jelke J FrosLaboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.ORCID 0000-0002-3291-8401

Funding

Ministerie van Infrastructuur en Waterstaat (!enW) 31181038Nederlandse Organisatie voor Wetenschappelijk Onderzoek 109986Nederlandse Organisatie voor Wetenschappelijk Onderzoek VI. Vidi. 213.027
6 · The paper itself

Abstract

Vertebrate animals and many small DNA and single-stranded RNA viruses that infect vertebrates have evolved to suppress genomic CpG dinucleotides. All organisms and most viruses additionally suppress UpA dinucleotides in protein-coding RNA. Synonymously recoding viral genomes to introduce CpG or UpA dinucleotides has emerged as an approach for viral attenuation and vaccine development. However, studies that investigate the effects of this recoding strategy on viral replication and pathogenesis

Indexed as

CulexDinucleoside PhosphatesGenome, ViralWest Nile FeverWest Nile virusAnimalsCell LineFemaleHumansMiceMosquito VectorsVirus ReplicationDinucleoside Phosphatesuridylyl-(3'-5')-adenosinedinucleotidesflaviviruslive-attenuated vaccinesneurovirulencevaccine safetyWest Nile virus

Identifiers

PMID40919899
PMCPMC12548394

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.