Evidence map›Paper›PMID 40918066›Full record

ArticleNAR genomics and bioinformatics2025

Large-scale composite hypothesis testing procedure for omics data analyses.

Annaïg De Walsche, Franck Gauthier, Nathalie Boissot, Alain Charcosset, Tristan Mary-Huard

Abstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Annaïg De WalscheMathématiques et Informatique Appliquées Paris-Saclay, AgroParisTech, INRAE, Université Paris-Saclay, 91120 Palaiseau, France.ORCID https://orcid.org/0000-0003-0603-1716
Franck GauthierGénétique Quantitative et Evolution - Le Moulon, INRAE, CNRS, AgroParisTech, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.ORCID https://orcid.org/0000-0003-0574-065X
Nathalie BoissotGénétique et Amélioration des Fruits et Légumes, INRAE, 84143 Montfavet, France.ORCID https://orcid.org/0000-0002-8266-9386
Alain CharcossetGénétique Quantitative et Evolution - Le Moulon, INRAE, CNRS, AgroParisTech, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.ORCID https://orcid.org/0000-0001-6125-503X
Tristan Mary-HuardMathématiques et Informatique Appliquées Paris-Saclay, AgroParisTech, INRAE, Université Paris-Saclay, 91120 Palaiseau, France.ORCID https://orcid.org/0000-0002-3839-9067

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Composite hypothesis testing using summary statistics is a well-established approach for assessing the effect of a single marker or gene across multiple traits or omics levels. Numerous procedures have been developed for this task and have been successfully applied to identify complex patterns of association between traits, conditions, or phenotypes. However, existing methods often struggle with scalability in large datasets or fail to account for dependencies between traits or omics levels, limiting their ability to control false positives effectively. To overcome these challenges, we present the qch_copula approach, which integrates mixture models with a copula function to capture dependencies between traits or omics and provides rigorously defined

Indexed as

GenomicsAlgorithmsHumansPhenotypeSoftware

Identifiers

PMID40918066
PMCPMC12412788

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.