Evidence map›Paper›PMID 40910796›Full record

ArticleGigaScience2025

The Earth Hologenome Initiative: Data Release 1.

Nanna Gaun, Carlotta Pietroni, Garazi Martin-Bideguren, Jonas Lauritsen, Ostaizka Aizpurua, Joana M Fernandes, Eduardo Ferreira, Fabien Aubret, Tom Sarraude, Constant Perry and 31 more

Abstract read
In one paragraph

Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors.

Nanna GaunCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0009-0002-3068-4653
Carlotta PietroniCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0002-2964-9829
Garazi Martin-BidegurenCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0003-0157-9125
Jonas LauritsenCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0001-8231-2830
Ostaizka AizpuruaCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0001-8053-3672
Joana M FernandesCESAM & Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.ORCID 0000-0001-5602-1490
Eduardo FerreiraCESAM & Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.ORCID 0000-0003-0497-6118
Fabien AubretStation d'Ecologie Théorique et Expérimentale, CNRS, 09200 Moulis, France.ORCID 0000-0002-7783-8659
Tom SarraudeStation d'Ecologie Théorique et Expérimentale, CNRS, 09200 Moulis, France.ORCID 0000-0002-3548-0935
Constant PerryStation d'Ecologie Théorique et Expérimentale, CNRS, 09200 Moulis, France.ORCID 0009-0000-7660-7130
Lucas WautersUniversità degli Studi dell'Insubria, 21100 Varese, Italy.ORCID 0000-0002-4871-5035
Claudia RomeoCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0002-5964-2847
Martina SpadaUniversità degli Studi dell'Insubria, 21100 Varese, Italy.
Claudia TranquilloUniversità degli Studi dell'Insubria, 21100 Varese, Italy.ORCID 0000-0002-7682-356X
Alex O SuttonSchool of Environmental and Natural Sciences, Bangor University, Bangor LL57 2UR, UK.ORCID 0000-0002-0311-7883
Michael GriesserDepartment of Biology, University of Konstanz, 78464 Konstanz, Germany.ORCID 0000-0002-2220-2637
Miyako H WarringtonLuondua Boreal Research Station, 93391 Arvidsjaur, Sweden.ORCID 0000-0003-2699-1167
Guillem Pérez I de LanuzaEthology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, 46980 Paterna, Valencia, Spain.ORCID 0000-0003-3736-6957
Javier AbalosEthology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, 46980 Paterna, Valencia, Spain.ORCID 0000-0001-9357-7420
Prem AguilarResearch Centre in Biodiversity and Genetic Resources, InBIO, CIBIO, Universidade do Porto, 4485-684 Vairão, Portugal.ORCID 0000-0001-7838-644X
Ferran de la CruzResearch Centre in Biodiversity and Genetic Resources, InBIO, CIBIO, Universidade do Porto, 4485-684 Vairão, Portugal.ORCID 0000-0002-4265-6046
Javier JusteEstación Biológica de Doñana (CSIC), 41092 Sevilla, Spain.ORCID 0000-0003-1383-8462
Pedro Alonso-AlonsoDepartment of Animal Ecology and Tropical Biology, University of Würzburg, 97074 Würzburg, Germany.ORCID 0000-0001-8791-5227
Jim GroombridgeDurrell Institute of Conservation and Ecology, School of Natural Sciences, University of Kent, Kent, Canterbury CT2 7NZ, UK.ORCID 0000-0002-6941-8187
Rebecca LouchDurrell Institute of Conservation and Ecology, School of Natural Sciences, University of Kent, Kent, Canterbury CT2 7NZ, UK.ORCID 0000-0001-9698-1824
Kevin RuhomaunNational Parks and Conservation Service, Ministry of Agro-Industry and Food Security, Government of Mauritius, RGP3+2RX Port Luis, Mauritius.
Sion HenshawMauritian Wildlife Foundation, 73418 Vacoas-Phoenix, Mauritius.
Carlos CabidoAranzadi Science Foundation, 20014 Donostia-San Sebastián, Spain.ORCID 0000-0001-7768-2714
Ion Garin BarrioAranzadi Science Foundation, 20014 Donostia-San Sebastián, Spain.
Emina ŠunjeFaculty of Science, University of Sarajevo, 71000 Sarajevo, Bosnia and Herzegovina.ORCID 0000-0003-3050-8545
Peter HosnerNatural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0001-7499-6224
Ivan PratesDepartment of Biology, Lund University, 223 62 Lund, Sweden.ORCID 0000-0001-6314-8852
Geoffrey M WhileSchool of Natural Sciences, University of Tasmania, Dynnyrne TAS 7005, Australia.ORCID 0000-0001-8122-9322
Roberto García-RoaDepartment of Biology, Lund University, 223 62 Lund, Sweden.
Tobias UllerDepartment of Biology, Lund University, 223 62 Lund, Sweden.ORCID 0000-0003-1293-5842
Nathalie FeinerDepartment of Biology, Lund University, 223 62 Lund, Sweden.ORCID 0000-0003-4648-6950
Elisa BonaccorsoInstituto Biósfera, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, 170901 Quito, Ecuador.ORCID 0000-0002-7262-9356
Pernille Klein-IpsenParasitology and Pathobiology, Department of Veterinary and Animal Sciences, University of Copenhagen, 1870 Copenhagen, Denmark.ORCID 0009-0008-3794-1580
Rosalina Molberg RotovnikParasitology and Pathobiology, Department of Veterinary and Animal Sciences, University of Copenhagen, 1870 Copenhagen, Denmark.ORCID 0009-0007-2521-2279
Antton AlberdiCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0002-2875-6446
Raphael EisenhoferCenter for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.ORCID 0000-0002-3843-0749

Funding

Agência Regional para o Desenvolvimento da Investigação, Tecnologia e Inovação PD/BD/150645/2020Carlsbergfondet CF20-0460Danmarks Grundforskningsfond DNRF143HORIZON EUROPE Framework Programme 101066225Villum Fonden 25925
6 · The paper itself

Abstract

backgroundThe Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.

resultsThe first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.

conclusionsThe dataset can be used to address fundamental questions about host-microbiota interactions and will be available to the research community under the EHI data usage conditions.

Indexed as

MetagenomeMetagenomicsMicrobiotaVertebratesAnimalsDatabases, GeneticEarth, PlanetBacteriaGenomeGenome-resolved metagenomicsMAGMetagenome-assembled genomeMetagenomicsMicrobiomeMicrobiota

Identifiers

PMID40910796
PMCPMC12412122

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.