Evidence map›Paper›PMID 40909725›Full record

ArticlebioRxiv : the preprint server for biology2025

Gabija restricts phages that antagonize a conserved host DNA repair complex.

Alex Hong, Miaoxi Liu, Alexis Truta, Alexander Talaie, Gerald R Smith, Joseph Bondy-Denomy

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alex HongUC San Francisco, Dept. of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158.ORCID 0000-0001-6438-9949
Miaoxi LiuUC San Francisco, Dept. of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158.ORCID 0009-0000-2251-430X
Alexis TrutaUC San Francisco, Dept. of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158.
Alexander TalaieUC San Francisco, Dept. of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158.
Gerald R SmithFred Hutchinson Cancer Center,1100 Fairview Avenue North, Seattle, WA 98109.ORCID 0000-0002-8747-1352
Joseph Bondy-DenomyUC San Francisco, Dept. of Microbiology & Immunology, 600 16th St N374, San Francisco, CA 94158.ORCID 0000-0002-4909-9481

Funding

Molecular analysis of genetic recombination and DNA break repairR35GM118120 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SMITH, GERALD R · 2016 to 2025
$9.3M
Genetic and Proteomic Approaches to Reveal Bacterial Vulnerabilities to Phage PredationR01AI167412 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph Bondy-Denomy · 2022 to 2026
$3.5M
NIAID NIH HHS R01 AI167412NIGMS NIH HHS R35 GM118120
6 · The paper itself

Abstract

Anti-bacteriophage systems like restriction-modification and CRISPR-Cas have DNA substrate specificity mechanisms that enable identification of invaders. How Gabija, a highly prevalent nuclease-helicase anti-phage system, executes self- vs. non-self-discrimination remains unknown. Here, we propose that phage-encoded DNA end-binding proteins that antagonize host RecBCD sensitize phages to Gabija. When targeting a temperate Lambda-like phage in

Identifiers

PMID40909725
PMCPMC12407980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.