Evidence map›Paper›PMID 40909554›Full record

ArticlebioRxiv : the preprint server for biology2025

Patterns of Mitochondrial ATP Predict Tissue Folding.

Bezia Lemma, Megan Rothstein, Pengfei Zhang, Bridget Waas, Marcus Kilwein, Safiya Topiwala, Sherry X Zhang, Anvitha Sudhakar, Katharine Goodwin, Elizabeth R Gavis and 3 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Bezia LemmaDepartments of Chemical & Biological Engineering, Princeton University, Princeton, NJ 08544.
Megan RothsteinDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.ORCID 0000-0002-5165-9505
Pengfei ZhangDepartments of Chemical & Biological Engineering, Princeton University, Princeton, NJ 08544.
Bridget WaasDepartments of Chemical & Biological Engineering, Princeton University, Princeton, NJ 08544.
Marcus KilweinDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Safiya TopiwalaDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Sherry X ZhangDepartments of Chemical & Biological Engineering, Princeton University, Princeton, NJ 08544.
Anvitha SudhakarDepartments of Mechanical & Aerospace Engineering, Princeton University, Princeton, NJ 08544.
Katharine GoodwinDepartment of Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
Elizabeth R GavisDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Ricardo MallarinoDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Andrej KosmrljDepartments of Mechanical & Aerospace Engineering, Princeton University, Princeton, NJ 08544.
Celeste M NelsonDepartments of Chemical & Biological Engineering, Princeton University, Princeton, NJ 08544.

Funding

Mechanisms of mRNA localization and translational control in Drosophila developmentR35GM126967 · NIGMS · PRINCETON UNIVERSITY · PI ELIZABETH R GAVIS · 2018 to 2026
$5.9M
Mechanical Clocks During Fetal DevelopmentDP1HD111539 · NICHD · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2022 to 2025
$5.7M
Interplay between mechanical forces and retinoic acid in lung developmentR01HL164861 · NHLBI · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2022 to 2025
$2.2M
Mechanical Forces and the Regulation of Airway Progenitor CellsR01HD099030 · NICHD · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2019 to 2023
$1.7M
Cis regulatory control of avian bill morphogenesisK00DE030326 · NIDCR · PRINCETON UNIVERSITY · PI ROTHSTEIN, MEGAN · 2023 to 2025
$274k
Epigenomic control of the neural crest cis-regulatory landscape by TGF-beta signalingF99DE030326 · NIDCR · CORNELL UNIVERSITY · PI ROTHSTEIN, MEGAN · 2021 to 2022
$77k
NHLBI NIH HHS R01 HL164861NICHD NIH HHS DP1 HD111539NICHD NIH HHS R01 HD099030NIDCR NIH HHS F99 DE030326NIDCR NIH HHS K00 DE030326NIGMS NIH HHS R35 GM126967
6 · The paper itself

Abstract

The construction of complex tissue shapes during embryonic development results from spatial patterns of gene expression and mechanical forces fueled by chemical energy from ATP hydrolysis. We find that chemical energy is similarly patterned during morphogenesis. Specifically, mitochondria are locally enriched at the apical sides of epithelial cells during apical constriction, which is widely used across the animal kingdom to fold epithelial tissues. Timelapse imaging, spatial transcriptomics, and measurements of oxygen consumption rate reveal that mitochondrial density, potential, and ATP increase in epithelial cells prior to actomyosin contraction and tissue folding, which is prevented by inhibiting oxidative phosphorylation. Mitochondrial enrichment and apicobasal patterning are conserved during apical constriction in flies, chicks, and mice, and these subcellular patterns can be used to predict computationally patterns of tissue folding. These findings highlight a spatial dimension of bioenergetics in embryonic development.

Indexed as

Energy metabolismglycolysismechanical stressreaction-diffusion modelingtissue morphodynamics

Identifiers

PMID40909554
PMCPMC12407887

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.