Evidence map›Paper›PMID 40909476›Full record

ArticlebioRxiv : the preprint server for biology2025

Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.

Jie Zheng, Elisabetta Manduchi, Christian J Stoeckert

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jie ZhengDepartment of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-2999-0103
Elisabetta ManduchiDepartment of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-4110-3714
Christian J StoeckertDepartment of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-5714-991X

Funding

Coordinating Center for Beta Cell Biology ConsortiumU01DK072473 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2005 to 2014
$61.0M
Integrative tools for protozoan parasite researchR01GM093132 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI STOECKERT, CHRISTIAN J. · 2010 to 2012
$1.1M
NIDDK NIH HHS U01 DK072473NIGMS NIH HHS R01 GM093132
6 · The paper itself

Abstract

The development process for the beta cell genomics application ontology (BCGO) is described. This process should be generally applicable and consists of integration of a subset of reference ontologies. A key element is use of the Ontology for Biomedical Investigation (OBI) as an ontology framework. Another element is enriching ontologies using existing patterns when needed. The ontology is validated in three aspects based on our needs including data annotation, queries and automated classification. The BCGO is available on: http://purl.obolibrary.org/obo/bcgo.owl.

Identifiers

PMID40909476
PMCPMC12407802

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.