Evidence map›Paper›PMID 40905990›Full record

ArticleThe Biochemical journal2025

Selectivity profiles and substrate recognition of Rab-phosphorylating kinases.

Deep Chatterjee, Verena Dederer, Landon Vu Nguyen, Marcel Wendel, Kamal R Abdul Azeez, Swetha Mahesula, Florian Stengel, Samara Reck-Peterson, Sebastian Mathea

Abstract read
In one paragraph

Article in The Biochemical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Deep Chatterjee *Institute of Pharmaceutical Chemistry, Goethe University, Frankfurt , 60438, Germany.ORCID 0000-0001-8190-9213
Verena Dederer *Institute of Pharmaceutical Chemistry, Goethe University, Frankfurt , 60438, Germany.ORCID 0009-0006-7557-5388
Landon Vu NguyenDepartment of Cellular and Molecular Medicine, School of Medicine, University of California, La Jolla, CA 92093, U.S.A.ORCID 0000-0002-3357-5527
Marcel WendelDepartment of Biology, University of Konstanz, Konstanz , 78457, Germany.
Kamal R Abdul AzeezInstitute of Pharmaceutical Chemistry, Goethe University, Frankfurt , 60438, Germany.ORCID 0000-0001-9985-0336
Swetha MahesulaDepartment of Cellular and Molecular Medicine, School of Medicine, University of California, La Jolla, CA 92093, U.S.A.
Florian StengelDepartment of Biology, University of Konstanz, Konstanz , 78457, Germany.ORCID 0000-0003-1447-4509
Samara Reck-PetersonDepartment of Cellular and Molecular Medicine, School of Medicine, University of California, La Jolla, CA 92093, U.S.A.ORCID 0000-0002-1553-465X
Sebastian MatheaInstitute of Pharmaceutical Chemistry, Goethe University, Frankfurt , 60438, Germany.ORCID 0000-0001-8500-4569

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Rab GTPase switch-2 region is a hotspot for post-translational modifications. Its phosphorylation can determine whether individuals develop Parkinson's disease or not. Other modifications of the same region are catalyzed by enzymes from bacterial pathogens when they infect human cells. Here, we profiled a set of kinases including LRRK1, LRRK2, DYRK1A, MST1 and TBK1 for their capability of phosphorylating Rab GTPases. We identified several novel kinase:Rab pairs, such as LRRK1:Rab43 and TBK1:Rab29. Further, we comprehensively assessed what makes a Rab GTPase a good kinase substrate, considering the Rab nucleotide-binding state and the Rab primary sequence. In a systematic mutational study, Rab variants with modulated phosphorylation properties were established, leading to the identification of a LRRK2 recognition patch in the Rab α3 helix. A Glu to Arg exchange in that patch increased the phosphorylation 18-fold, indicating that Rabs are suboptimal LRRK2 substrates. Given that this effect is also observed in a cellular model, we propose that our variants will be excellent tools for analysing the physiological function of Rab phosphorylation.

Indexed as

Leucine-Rich Repeat Serine-Threonine Protein Kinase-2Protein Serine-Threonine Kinasesrab GTP-Binding ProteinsHEK293 CellsHumansPhosphorylationSubstrate SpecificityLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRRK1 protein, humanLRRK2 protein, humanProtein Serine-Threonine KinasesRab29 protein, humanrab GTP-Binding ProteinsTBK1 protein, humanenzyme activityenzymologyGTPaseskinasesleucine-rich repeat kinasesynaptic vesicle

Identifiers

PMID40905990
PMCPMC12599248

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.