Evidence map›Paper›PMID 40905410›Full record

ArticlePlant biotechnology journal2025

Transcription Factor GmERFA Interacts With GmNFYA and Acts as a Negative Regulator of Seed Fatty Acid Accumulation in Soybean.

Yue Liu, Yang Hu, Jun-Jie Wei, Zhi-Hao Jiang, Jia-Qi Han, Meng Jin, Lu-Yao Zhang, Ling-Yi Zheng, Wei Li, Ying-Dong Bi and 11 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. The transcriptional cascade CiERF023Horticulture research · 2026
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Yue LiuState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0009-0004-9476-8885
Yang HuHangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, China.ORCID https://orcid.org/0000-0001-7826-045X
Jun-Jie WeiState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Zhi-Hao JiangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Jia-Qi HanState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Meng JinState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0009-0009-4762-1940
Lu-Yao ZhangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Ling-Yi ZhengState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Wei LiCrop Tillage and Cultivation Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China.
Ying-Dong BiCrop Tillage and Cultivation Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China.
Yong-Cai LaiCrop Tillage and Cultivation Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China.
Bin ZhouCrop Research Institute of Anhui Academy of Agricultural Sciences, Hefei, China.
De-Yue YuNational Center for Soybean Improvement, National Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China.ORCID https://orcid.org/0000-0001-7263-2750
Feng-Xia ZhangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Guo-Dong WangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0000-0001-9917-0656
Cui-Cui YinState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Jian-Jun TaoState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Shou-Yi ChenState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Wan-Ke ZhangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Wei WeiState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0000-0002-9471-9694
Jin-Song ZhangState Key Lab of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0000-0003-2165-3468

Funding

National Key Research and Development Program of China 2021YFF1000104National Key Research and Development Program of China 2023YFD1200602the National Natural Science Foundation of China 32090062the National Natural Science Foundation of China 32090063the STI 2030-Major Projects 2023ZD0406801the STI 2030-Major Projects 2024ZD040780204
6 · The paper itself

Abstract

Soybean is one of the most important oilseed crops, and its seed oil content directly determines the economic value and industrial applicability worldwide. However, how soybean seed oil accumulation is regulated remains less understood. Here, through RNA-seq analysis and screening for the interacting proteins of a positive oil regulator GmNFYA, we identified an AP2/ERF-type transcription factor GmERFA, which acts as a negative regulator of oil accumulation. Knocking out GmERFA and its homologue by genome editing increased seed total fatty acid content, while overexpression of GmERFA leads to a reduced fatty acid level in transgenic soybean. GmERFA interacts with GmNFYA to inhibit its transcriptional activation of GmbZIP123 and GmZF392, both of which promotes seed oil accumulation. The GmERFA also directly binds to the promoter regions of GmbZIP123 and GmZF392 and represses their gene expression. Through further analysis of more than 300 soybean accessions, an elite allele of ERFA with Hap3 promoter is identified to correlate with lower promoter activity, lower gene expression but higher seed oil content. The Hap3 ERFA may be selected and fixed during soybean domestication. Together, our study discovers a brake gene for oil accumulation and may function in a novel molecular network GmERFA-GmNFYA-GmbZIP123/GmZF392 at the later stage of soybean seed development. Manipulation of the gene, its elite allele, and the whole pathway should benefit breeding for high oil cultivars in soybean.

Indexed as

Fatty AcidsGlycine maxPlant ProteinsSeedsTranscription FactorsGene Expression Regulation, PlantPlant OilsPlants, Genetically ModifiedPromoter Regions, GeneticFatty AcidsPlant OilsPlant ProteinsTranscription FactorsGmERFAregulatory networkseed oilsoybean

Identifiers

PMID40905410
PMCPMC12665053

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.