Evidence map›Paper›PMID 40904115›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2025

Specificity and mechanism of tRNA cleavage by the AriB Toprim nuclease of the PARIS bacterial immune system.

Svetlana Belukhina, Baptiste Saudemont, Florence Depardieu, Tom Lorthios, Tinashe P Maviza, Alexei Livenskyi, Marina Serebryakova, Maria Aleksandrova, Elizaveta Ukholkina, Nadezhda Burmistrova and 10 more

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Preface: the ecology and evolution of bacterial immune systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  10. Specificity and mechanism of tRNA cleavage by the AriB Toprim nuclease of the PARIS bacterial immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  11. Bacterial Schlafens mediate anti-phage defense.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Svetlana Belukhina *Skolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Baptiste Saudemont *Department of Microbiology, Synthetic Biology, Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Paris 75015, France.
Florence DepardieuDepartment of Microbiology, Synthetic Biology, Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Paris 75015, France.
Tom LorthiosDepartment of Microbiology, Synthetic Biology, Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Paris 75015, France.
Tinashe P MavizaSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Alexei LivenskyiSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Marina SerebryakovaLomonosov Moscow State University, Moscow 119991, Russian Federation.
Maria AleksandrovaSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Elizaveta UkholkinaSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Nadezhda BurmistrovaLomonosov Moscow State University, Moscow 119991, Russian Federation.
Petr SergievSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
Marouane LibiadDepartment of Microbiology, Stress Adaptation and Metabolism Unit, Institut Pasteur, Université Paris Cité, CNRS UMR 6047, Paris 75015, France.
Sarah DubracDepartment of Microbiology, Stress Adaptation and Metabolism Unit, Institut Pasteur, Université Paris Cité, CNRS UMR 6047, Paris 75015, France.
Frederic BarrasDepartment of Microbiology, Stress Adaptation and Metabolism Unit, Institut Pasteur, Université Paris Cité, CNRS UMR 6047, Paris 75015, France.
Yuri MotorinSMP IBSLor, EpiRNA-Seq Core Facility, Université de Lorraine, Vandoeuvre-les-Nancy 54505, France.
Virginie MarchandSMP IBSLor, EpiRNA-Seq Core Facility, Université de Lorraine, Vandoeuvre-les-Nancy 54505, France.
Gregor HageluekenInstitute of Structural Biology, Venusberg-Campus 1, University of Bonn, Bonn 53127, Germany.
Artem IsaevSkolkovo Institute of Science and Technology, Moscow 121205, Russian Federation.
David BikardDepartment of Microbiology, Synthetic Biology, Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Paris 75015, France.ORCID 0000-0002-5729-1211
Christophe RouillonDepartment of Microbiology, Synthetic Biology, Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Paris 75015, France.

Funding

Agence Nationale de la RechercheH2020 European Research CouncilMinistry of Science and Higher Education of the Russian FederationRussian Science Foundation
6 · The paper itself

Abstract

Transfer RNA (tRNA) molecules have been recently recognized as widespread targets of bacterial immune systems. Translation inhibition through tRNA cleavage or modification inhibits phage propagation, thereby protecting the bacterial population. To counteract this, some viruses encode their own tRNA molecules, allowing infection to take place. The AriB effector of the PARIS defence system is a Toprim nuclease previously shown to target the

Indexed as

EndoribonucleasesEscherichia coliEscherichia coli ProteinsRNA, BacterialRNA, TransferEndoribonucleasesEscherichia coli ProteinsRNA, BacterialRNA, Transferbacterial immunitybacteriophagenucleasePARIStRNA

Identifiers

PMID40904115
PMCPMC12409363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.