Evidence map›Paper›PMID 40903981›Full record

ArticleMolecular oncology2025

Multi-omic profiling of squamous cell lung cancer identifies metabolites and related genes associated with squamous cell carcinoma.

Johan Staaf, Daniel Ehinger, Hans Brunnström, Mats Jönsson, Frida Rosengren, Marija Kotevska, Anna Karlsson, Mattias Aine, Christian Frezza, Maria Planck and 1 more

Abstract read
In one paragraph

Article in Molecular oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Johan StaafDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.ORCID 0000-0001-5254-5115
Daniel EhingerDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Hans BrunnströmDepartment of Genetics, Pathology, and Molecular Diagnostics, Skåne University Hospital, Lund, Sweden.
Mats JönssonDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Frida RosengrenDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Marija KotevskaDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Anna KarlssonDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Mattias AineDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Christian FrezzaFaculty of Medicine and University Hospital Cologne, Institute for Metabolomics in Ageing, Cluster of Excellence Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Germany.
Maria PlanckDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.
Elsa ArbajianDivision of Oncology, Department of Clinical Sciences Lund, Lund University, Sweden.ORCID 0000-0002-1484-0073

Funding

Biomedical Data Commons Workbench (BDCW)OT2OD030544 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2020 to 2024
$3.2M
Alexander von Humboldt-StiftungCancerfondenCancer Research UK C51061/A27453Crafoordska Stiftelsen 20220983European Research Council ERC819920Fru Berta Kamprads Stiftelse 2021-13Fru Berta Kamprads Stiftelse 2022-38Magnus Bergvalls Stiftelse 2021-04321Magnus Bergvalls Stiftelse 2022-287NIH HHS OT2 OD030544SjöbergstiftelsenStiftelsen Jubileumsklinikens Forskningsfond mot CancerStiftelsen Thelma Zoégas fond för medicinsk forskningThe National Health Services (Region Skåne/ALF)The Royal Physiografic Society of Lund 42366The Stig and Ragna Gorthon Foundation
6 · The paper itself

Abstract

Squamous cell lung carcinoma (SqCC) is the second most common histological subtype of lung cancer. Besides tumor-initiating and promoting DNA, RNA, and epigenetic alterations, aberrant cell metabolism is a hallmark of carcinogenesis. This study aimed to identify SqCC-specific key regulators that could eventually be used as new anticancer targets. Transcriptional and metabolomic data were gathered for a cohort of resected lung cancers. SqCC-specific differentially expressed genes were integrated with metabolic data. Findings were validated in cohorts of tumors, normal specimens, and cell lines. In situ protein expression of SLC6A8 was investigated. Differential gene expression analysis identified a subset of SqCC-specific genes with metabolic functions through the Reactome database, and/or correlated to specific metabolites through GEMs models. Metabolic profiling identified seven SqCC-specific metabolites, of which increased creatine levels, in particular, matched to SqCC-specific expression of SLC6A8. Expression of the gene appeared tumor cell-associated. Elevated creatine levels and overexpression of its transporter SLC6A8 appear a distinct metabolic feature of SqCC. Considering ongoing clinical trials in other malignancies, exploring SLC6A8 inhibition in SqCC appears motivated based on a metabolic addiction hypothesis.

Indexed as

Carcinoma, Squamous CellLung NeoplasmsMetabolomeMetabolomicsCell Line, TumorFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMultiomicscreatinelung cancermetabolomicsSLC6A8squamous cell lung carcinoma

Identifiers

PMID40903981
PMCPMC12688162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.