Evidence map›Paper›PMID 40903550›Full record

ArticleThe EMBO journal2025

Bacterial cell widening alters periplasmic size and activates envelope stress responses.

Matylda Zietek, Amanda Miguel, Handuo Shi, Iskander Khusainov, Abir T Asmar, Sri Ram, Morgane Wartel, Anna Sueki, Martin Schorb, Mark Goulian and 4 more

Abstract read
In one paragraph

Article in The EMBO journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Matylda Zietek *Genome Biology Unit, EMBL Heidelberg, Heidelberg, 69117, Germany.
Amanda Miguel *Department of Bioengineering, Stanford University, Stanford, CA, 94305, USA.
Handuo Shi *Department of Bioengineering, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-1688-6905
Iskander KhusainovDepartment of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany.ORCID http://orcid.org/0000-0001-5199-5157
Abir T Asmarde Duve Institute, UCLouvain, Brussels, Belgium.
Sri RamSchool of Arts and Sciences, Azim Premji University, Bangalore, Karnataka, India.ORCID http://orcid.org/0009-0007-8994-7127
Morgane WartelGenome Biology Unit, EMBL Heidelberg, Heidelberg, 69117, Germany.ORCID http://orcid.org/0000-0002-4955-7972
Anna SuekiGenome Biology Unit, EMBL Heidelberg, Heidelberg, 69117, Germany.
Martin SchorbElectron Microscopy Core Facility, EMBL Heidelberg, Heidelberg, 69117, Germany.
Mark GoulianDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0003-0076-023X
Jean-François Colletde Duve Institute, UCLouvain, Brussels, Belgium.ORCID http://orcid.org/0000-0001-8069-7036
Martin BeckDepartment of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-7397-1321
Kerwyn Casey HuangDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA. kchuang@stanford.edu.ORCID http://orcid.org/0000-0002-8043-8138
Athanasios TypasGenome Biology Unit, EMBL Heidelberg, Heidelberg, 69117, Germany. typas@embl.de.ORCID http://orcid.org/0000-0002-0797-9018

Funding

Regulation of Bacterial Two-Component Signaling by Small Membrane ProteinsR01GM080279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D · 2007 to 2020
$3.7M
Engineering of cell shape and intracellular organizationDP2OD006466 · OD · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 2009 to 2009
$2.4M
Achievement Rewards for College Scientists Foundation (ARCS) N/ADeutsche Forschungsgemeinschaft (DFG) TY 116/2-1James S. McDonnell Foundation (JSMF) N/ANational Science Foundation (NSF) EF-2125383National Science Foundation (NSF) IOS-2032985National Science Foundation (NSF) MCB-1149328NIGMS NIH HHS R01 GM080279NIH HHS DP2 OD006466NSF | National Science Foundation Graduate Research Fellowship Program (GRFP) N/AODCDC CDC HHS DP2 OD006466
6 · The paper itself

Abstract

The Rcs signal transduction system is a phosphorelay responsible for sensing enterobacterial cell envelope stresses. In Escherichia coli, the Rcs system is required to survive treatment with A22 and mecillinam, antibiotics that perturb cell size. To test whether size changes are correlated with envelope damage and thereby sensed by the Rcs system, we tuned E. coli cell size via A22 treatment, mutations in the cell-shape determinant MreB, and mechanically confined growth. In all conditions, cell width was strongly correlated with Rcs activation, and RcsF, the outer-membrane-localized upstream component, was essential for responding to cell width changes. Several gene deletions that induce Rcs resulted in cells that were wider than wild-type. Cryo-electron microscopy revealed that the periplasm of a wide MreB mutant is ~3 nm thinner than in wild-type cells, bringing RcsF closer to the downstream, inner-membrane-localized components of the signaling cascade. Conversely, extending the RcsF linker region in wild-type cells by ~3 nm increased Rcs activity. Thus, we propose that the Rcs system responds to changes in cell width due to altered periplasmic thickness.

Indexed as

Escherichia coliEscherichia coli ProteinsPeriplasmStress, PhysiologicalCell MembraneCryoelectron MicroscopyMutationSignal TransductionEscherichia coli ProteinsMreB protein, E colircsF protein, E coliCell ShapeGram-negative Cell EnvelopeMorphogenesisPeriplasmRcs Phosphorelay

Identifiers

PMID40903550
PMCPMC12528386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.