Evidence map›Paper›PMID 40902998›Full record

ArticleAnalytical chemistry2025

Benchmark for Quantitative Global and Redox Proteomics Analysis by Combining Protein-Aggregation Capture and Data Independent Acquisition.

Ana Martinez-Val, Samuel Lozano-Juárez, Jorge Lumbreras Burgueño, Irene Rodríguez, Marinela Couselo-Seijas, Ana Simón-Chica, Carlos Galán-Arriola, Rodrigo Fernández-Jiménez, Estefanía Núñez, Inmaculada Jorge and 3 more

Abstract read
In one paragraph

Article in Analytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Proteoforms as the true units of physiological function.European journal of applied physiology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ana Martinez-ValCardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.ORCID 0000-0002-8784-3822
Samuel Lozano-JuárezCardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.ORCID 0009-0000-2602-5773
Jorge Lumbreras BurgueñoProteomics Unit, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.ORCID 0009-0009-7370-5259
Irene RodríguezProteomics Unit, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.
Marinela Couselo-SeijasCentro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Novel Arrhythmogenic Mechanisms Program, Madrid 28029, Spain.
Ana Simón-ChicaCentro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Novel Arrhythmogenic Mechanisms Program, Madrid 28029, Spain.
Carlos Galán-ArriolaCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Madrid 28029, Spain.
Rodrigo Fernández-JiménezCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Madrid 28029, Spain.
Estefanía NúñezCardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.
Inmaculada JorgeCardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.
David Filgueiras-RamaCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Madrid 28029, Spain.
Borja IbáñezCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Madrid 28029, Spain.
Jesús VázquezCardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid 28029, Spain.

Funding

NIMHD NIH HHS L60 MD007229
6 · The paper itself

Abstract

Oxidative damage plays a critical role in various diseases including cardiovascular and neurological disorders. Thiol redox reactions, acting as oxidative stress sensors, influence protein structure and function. Redox proteomics, based on the differential alkylation of cysteine sites followed by mass spectrometry, enables the comprehensive analysis of thiol redox status in cells and tissues. However, these approaches require extensive sample manipulation and are not compatible with data-independent acquisition techniques. Here, we introduce PACREDOX, an innovative strategy based on protein aggregation capture (PAC), and demonstrate its compatibility with library-free DIA. Compared with traditional methods such as FASILOX, PACREDOX reduces preparation time and costs while maintaining thiol and proteome coverage. To enable library-free DIA, we corrected

Indexed as

ProteinsProteomicsAnimalsMass SpectrometryMiceMyocardial InfarctionOxidation-ReductionOxidative StressSulfhydryl CompoundsProteinsSulfhydryl Compounds

Identifiers

PMID40902998
PMCPMC12445338

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.