Evidence map›Paper›PMID 40902605›Full record

ArticleDevelopmental cell2025

Preventing CpG hypermethylation in oocytes safeguards mouse development.

Yumiko K Kawamura, Evgeniy A Ozonov, Panagiotis Papasaikas, Takashi Kondo, Nhuong V Nguyen, Michael B Stadler, Sebastien A Smallwood, Haruhiko Koseki, Antoine H F M Peters

Abstract read
In one paragraph

Article in Developmental cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yumiko K KawamuraFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland.
Evgeniy A OzonovFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland; SIB Swiss Institute of Bioinformatics, 4056 Basel, Switzerland.
Panagiotis PapasaikasFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland; SIB Swiss Institute of Bioinformatics, 4056 Basel, Switzerland.
Takashi KondoLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (IMS), Yokohama 230-0045, Japan.
Nhuong V NguyenFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland.
Michael B StadlerFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland; SIB Swiss Institute of Bioinformatics, 4056 Basel, Switzerland.
Sebastien A SmallwoodFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland.
Haruhiko KosekiLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (IMS), Yokohama 230-0045, Japan.
Antoine H F M PetersFriedrich Miescher Institute for Biomedical Research, 4056 Basel, Switzerland; Faculty of Sciences, University of Basel, 4056 Basel, Switzerland. Electronic address: antoine.peters@fmi.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Except for regulatory CpG-island sequences, genomes of most mammalian cells are widely DNA-methylated. In oocytes, though, DNA methylation (DNAme) is largely confined to transcribed regions. The mechanisms restricting de novo DNAme in oocytes and their relevance thereof for zygotic genome activation and embryonic development are largely unknown. Here we show that KDM2A and KDM2B, two histone demethylases, prevent genome-wide accumulation of histone H3 lysine 36 di-methylation, thereby impeding DNMT3A-catalyzed DNAme. We demonstrate that aberrant DNAme at CpG islands inherited from Kdm2a/Kdm2b double-mutant oocytes represses gene transcription in two-cell embryos. Aberrant maternal DNAme impairs pre-implantation embryonic development, which is suppressed by Dnmt3a deficiency during oogenesis. Hence, KDM2A/KDM2B are essential for confining the oocyte methylome, thereby conferring competence for early embryonic development. Our research implies that the reprogramming capacity eminent to early embryos is insufficient for erasing aberrant DNAme from maternal chromatin, and that early development is susceptible to gene dosage haplo-insufficiency effects.

Indexed as

CpG IslandsDNA MethylationEmbryonic DevelopmentF-Box ProteinsJumonji Domain-Containing Histone DemethylasesOocytesAnimalsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AFemaleGene Expression Regulation, DevelopmentalHistone DemethylasesHistonesMiceOogenesisDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADnmt3a protein, mouseF-Box ProteinsHistone DemethylasesHistonesJMJD2A protein, mouseJumonji Domain-Containing Histone DemethylasesCpG islandDNA methylationembryogenesisKDM2AKDM2Bmaternal epigenetic inheritanceoocytePolycombPRC1reprogramming

Identifiers

PMID40902605
PMCPMC12687725

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.