Evidence map›Paper›PMID 40899627›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2025

SP3 and DEP1 Orchestrate Panicle Architecture by Jointly Regulating APO2 Expression in Rice.

Yuexin Liu, Niannian Chen, Xiaowei Fan, Xueqing Xia, Yilong Yao, Wen Huang, Jin Sun, Lintao Huang, Lei Wang, Hong Yu and 2 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. SP3 and DEP1 Orchestrate Panicle Architecture by Jointly Regulating APO2 Expression in Rice.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yuexin LiuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Niannian ChenNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Xiaowei FanNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Xueqing XiaNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Yilong YaoYazhouwan National Laboratory, Sanya, 572024, China.
Wen HuangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Jin SunNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Lintao HuangYazhouwan National Laboratory, Sanya, 572024, China.
Lei WangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
Hong YuYazhouwan National Laboratory, Sanya, 572024, China.
Jiayang LiYazhouwan National Laboratory, Sanya, 572024, China.
Yongzhong XingNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.ORCID https://orcid.org/0000-0003-1376-1514

Funding

Biological Breeding National Science and Technology Major Project 2023ZD04068Earmarked Fund for China Agriculture Research System CARS-01Foundation of Hubei Hongshan Laboratory 2021hszd010High Quality Development Projects of Hubei Province for Seed Industry HBZY2023B001-03Natural Science Foundation of China W2412130
6 · The paper itself

Abstract

Panicle architecture is largely determined by meristem activity. This previous study shows that DNA binding with one finger (Dof) transcription factor Short Panicle 3 (SP3) regulates panicle architecture. However, the molecular mechanisms of SP3 controlling panicle architecture remain largely unknown. Here, SP3 is shown to enhance inflorescence meristem (IM) activity. Histological analysis shows that IM size rather than the timing of the meristem transition significantly reduces in SP3 mutants. Several assays reveal that SP3 interacts with the C-terminal cysteine-rich domain of DENSE AND ERECT PANICLE1 (DEP1), a class C Gγ subunit, thereby regulating its plasma membrane-nucleus shuttle. SP3 directly binds to the cis element (A/T)AAAG located within the -561 to -517 bp region upstream of the ABERRANT PANICLE ORGANIZATION2 (APO2) promoter and activates APO2 expression, a positive regulator of panicle size. Genetic analysis indicates that APO2 functions downstream of SP3 to promote panicle branching. Additionally, loss of function of DEP1 increases APO2 expression and spikelet density. Transcriptional activity assays show that the interaction between DEP1 and SP3 suppresses SP3-mediated activation on APO2. Altogether, this study uncovers a transcriptional regulatory mechanism involving SP3 and DEP1 in controlling APO2 expression, offering new insights into the genetic network underlying rice panicle development.

Indexed as

Gene Expression Regulation, PlantOryzaPlant ProteinsSp3 Transcription FactorTranscription FactorsInflorescenceMeristemPromoter Regions, GeneticPlant ProteinsSp3 Transcription FactorTranscription FactorsAPO2 expressionDOF transcription factormeristem activitypanicle architectureprotein interaction

Identifiers

PMID40899627
PMCPMC12667520

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.