Evidence map›Paper›PMID 40898783›Full record

ArticleGenetics2025

CDH-3/cadherin, YAP-1/YAP, and EGL-44/TEAD promote SYX-2/syntaxin and EFF-1 fusogen-mediated phagosome closure.

Alec Whited, Aladin Elkhalil, Ginger Clark, Piya Ghose

Abstract read
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In one paragraph

Article in Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Alec WhitedDepartment of Biology, The University of Texas at Arlington, Arlington, TX 76019, United States.ORCID 0009-0004-0185-4777
Aladin ElkhalilDepartment of Biology, The University of Texas at Arlington, Arlington, TX 76019, United States.ORCID 0000-0002-1826-2506
Ginger ClarkDepartment of Biology, The University of Texas at Arlington, Arlington, TX 76019, United States.ORCID 0009-0004-6802-0777
Piya GhoseDepartment of Biology, The University of Texas at Arlington, Arlington, TX 76019, United States.ORCID 0000-0001-5612-617X

Funding

Cancer Research RR100091MIRA R35GM142489National Institutes of Health-National Institute
6 · The paper itself

Abstract

Physical interactions between cells can profoundly impact cell fate. A vital cell fate for normal development and homeostasis is programmed cell death. Cells fated to die must be efficiently cleared via phagocytosis, with defects associated with a variety of diseases. How cell-cell physical associations affect programmed cell elimination is not fully understood. Here we describe, in vivo, a cell-cell adhesion-driven signaling pathway that ensures compartment-specific cell clearance. We previously described the specialized cell death program "Compartmentalized Cell Elimination" (CCE) in the Caenorhabditis elegans embryo. During CCE, the tail-spike scaffolding cell (TSC), a polarized epithelial cell with a posteriorly directed process, is eliminated via an ordered death sequence. The TSC scaffolds the tail tip, formed by the hyp10 epithelial cell, which in turn serves as the phagocyte for the dying TSC process. We have previously provided mechanistic insights into the poorly understood step of phagocytosis, phagosome sealing, reporting that the fusogen EFF-1 helps clear the TSC process specifically. We identify here a genetic pathway that promotes the translocation of EFF-1 to sealing sites. We identify an upstream role for cell-cell physical association and signaling via the cadherin CDH-3, followed by new roles for the transcription factors YES-associated protein (YAP)-1/YAP and EGL-44/TEAD in promoting the localization of SYX-2/syntaxin around the dying TSC remnant. Moreover, we find that SYX-2, known to promote EFF-1's role in wound healing, also promotes EFF-1 translocation to sites of phagosome closure. Our work sheds additional light on phagosome sealing and implicates cell-cell adhesive forces and signaling as important in cell uptake.

Indexed as

CadherinsCaenorhabditis elegans ProteinsMembrane GlycoproteinsPhagosomesTranscription FactorsAdaptor Proteins, Signal TransducingAnimalsCaenorhabditis elegansCell AdhesionPhagocytosisSignal TransductionYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingCadherinsCaenorhabditis elegans ProteinsEFF-1 protein, C elegansMembrane GlycoproteinsTranscription FactorsYAP-Signaling Proteinsadhesiondeathfusionphagocytosistranscription

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What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.