Evidence map›Paper›PMID 40897805›Full record

ArticleNature cell biology2025

Genome-wide CRISPR screen identifies Menin and SUZ12 as regulators of human developmental timing.

Nan Xu, Hyein S Cho, James O S Hackland, Silvia Benito-Kwiecinski, Nathalie Saurat, Oliver Harschnitz, Marco Vincenzo Russo, Ralph Garippa, Gabriele Ciceri, Lorenz Studer

Abstract read
In one paragraph

Article in Nature cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nan XuThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Hyein S ChoThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-3166-585X
James O S HacklandThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-7087-9995
Silvia Benito-KwiecinskiThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Nathalie SauratThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Oliver HarschnitzThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-6496-881X
Marco Vincenzo RussoGene Editing and Screening Core Facility, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ralph GarippaGene Editing and Screening Core Facility, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-3917-0739
Gabriele CiceriThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA. gabriele.ciceri@gmail.com.ORCID http://orcid.org/0000-0002-8481-9771
Lorenz StuderThe Center for Stem Cell Biology and Developmental Biology program; Memorial Sloan Kettering Cancer Center, New York, NY, USA. studerl@mskcc.org.ORCID http://orcid.org/0000-0003-0741-7987

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Center for scalable knockout and multimodal phenotyping in genetically diverse human genomesUM1HG012654 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI Danwei Huangfu, LORENZ P. STUDER · 2022 to 2026
$9.1M
Cell Intrinsic and Extrinsic Factors Driving Maturation in Human PSC-derived NeuronsR01NS128087 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LORENZ P. STUDER · 2023 to 2026
$2.6M
NCI NIH HHS P30 CA008748NHGRI NIH HHS UM1 HG012654NINDS NIH HHS R01 NS128087U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) UM1HG012654U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS128087U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute (National Cancer Institute Division of Cancer Epidemiology and Genetics) P30 CA08748
6 · The paper itself

Abstract

Embryonic development follows a conserved sequence of events across species, yet the pace of development is highly variable and particularly slow in humans. Species-specific developmental timing is largely recapitulated in stem cell models, suggesting a cell-intrinsic clock. Here we use directed differentiation of human embryonic stem cells into neuroectoderm to perform a whole-genome CRISPR-Cas9 knockout screen and show that the epigenetic factors Menin and SUZ12 modulate the speed of PAX6 expression during neural differentiation. Genetic and pharmacological loss-of-function of Menin or SUZ12 accelerate cell fate acquisition by shifting the balance of H3K4me3 and H3K27me3 at bivalent promoters, thereby priming key developmental genes for faster activation upon differentiation. We further reveal a synergistic interaction of Menin and SUZ12 in modulating differentiation speed. The acceleration effects were observed in definitive endoderm, cardiomyocyte and neuronal differentiation paradigms, pointing to chromatin bivalency as a general driver of timing across germ layers and developmental stages.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsEmbryonic DevelopmentHuman Embryonic Stem CellsPolycomb Repressive Complex 2Proto-Oncogene ProteinsCell DifferentiationEpigenesis, GeneticGene Expression Regulation, DevelopmentalHistonesHumansNeoplasm ProteinsNeuronsPAX6 Transcription FactorPromoter Regions, GeneticTranscription FactorsHistonesMEN1 protein, humanNeoplasm ProteinsPAX6 Transcription FactorPolycomb Repressive Complex 2Proto-Oncogene ProteinsSUZ12 protein, humanTranscription Factors

Identifiers

PMID40897805
PMCPMC12431854

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.