Evidence map›Paper›PMID 40897715›Full record

ArticleNature communications2025

Selective ubiquitination of drug-like small molecules by the ubiquitin ligase HUWE1.

Barbara Orth, Pavel Pohl, Florian Aust, Yanlong Ji, Ayshwarya Seenivasan, Olexandr Dybkov, Xiaojun Julia Liang, Lars Bock, Florian Leidner, Sophie Levantovsky and 13 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Ubiquitin System-Driven Proteostasis in DNA Damage Response.International journal of molecular sciences · 2026
    Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Barbara Orth *Max Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany.
Pavel Pohl *Max Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany.ORCID http://orcid.org/0000-0003-1577-7309
Florian AustMax Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany.ORCID http://orcid.org/0009-0002-2021-7146
Yanlong JiMax Planck Institute for Multidisciplinary Sciences, Research Group 'Bioanalytical Mass Spectrometry', Göttingen, Germany.
Ayshwarya SeenivasanMax Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany.ORCID http://orcid.org/0000-0002-4340-5847
Olexandr DybkovMax Planck Institute for Multidisciplinary Sciences, Research Group 'Bioanalytical Mass Spectrometry', Göttingen, Germany.ORCID http://orcid.org/0000-0001-6005-7242
Xiaojun Julia LiangDepartment for Medicinal Chemistry, Institute for Biomedical Engineering, Faculty of Medicine, Eberhard Karls University Tübingen, Tübingen, Germany.
Lars BockMax Planck Institute for Multidisciplinary Sciences, Department of Theoretical and Computational Biophysics, Göttingen, Germany.ORCID http://orcid.org/0000-0003-4554-7336
Florian LeidnerMax Planck Institute for Multidisciplinary Sciences, Department of Theoretical and Computational Biophysics, Göttingen, Germany.ORCID http://orcid.org/0000-0002-0048-889X
Sophie LevantovskyMunich Cluster for Systems Neurology (SyNergy), Faculty of Medicine, Ludwig-Maximilians-University München, Munich, Germany.ORCID http://orcid.org/0000-0002-0918-6871
Patrick SchardeyMax Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany.
Pascal SanderDepartment of Pharmaceutical/Medicinal Chemistry, Institute of Pharmaceutical Sciences, Eberhard Karls University Tübingen, Tübingen, Germany.
Nathanael J DischDepartment of Pharmaceutical/Medicinal Chemistry, Institute of Pharmaceutical Sciences, Eberhard Karls University Tübingen, Tübingen, Germany.
Masanja L TrautzDepartment of Pharmaceutical/Medicinal Chemistry, Institute of Pharmaceutical Sciences, Eberhard Karls University Tübingen, Tübingen, Germany.
Athanasia MiziInstitute of Pathology, University Medical Center Göttingen, Göttingen, Germany.
Argyris PapantonisInstitute of Pathology, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0001-7551-1073
Christof LenzBioanalytics, Department of Clinical Chemistry, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0002-0946-8166
Helmut GrubmüllerMax Planck Institute for Multidisciplinary Sciences, Department of Theoretical and Computational Biophysics, Göttingen, Germany.
Wieland SteinchenDepartment of Chemistry, Philipps University Marburg, Marburg, Germany.
Christian BehrendsMunich Cluster for Systems Neurology (SyNergy), Faculty of Medicine, Ludwig-Maximilians-University München, Munich, Germany.ORCID http://orcid.org/0000-0002-9184-7607
Henning UrlaubMax Planck Institute for Multidisciplinary Sciences, Research Group 'Bioanalytical Mass Spectrometry', Göttingen, Germany.ORCID http://orcid.org/0000-0003-1837-5233
Matthias GehringerDepartment for Medicinal Chemistry, Institute for Biomedical Engineering, Faculty of Medicine, Eberhard Karls University Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0003-0163-3419
Sonja LorenzMax Planck Institute for Multidisciplinary Sciences, Research Group 'Ubiquitin Signaling Specificity', Göttingen, Germany. sonja.lorenz@mpinat.mpg.de.ORCID http://orcid.org/0000-0002-9639-2381

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) BE 4685/7-2 (ID: 447112704Deutsche Forschungsgemeinschaft (German Research Foundation) CRC1177 (project ID: 259130777)Deutsche Forschungsgemeinschaft (German Research Foundation) EXC 2145 SyNergy (project ID: 390857198)Deutsche Forschungsgemeinschaft (German Research Foundation) EXC 2180 (project ID: 390900677)Deutsche Forschungsgemeinschaft (German Research Foundation) FOR2314 (project P11)Deutsche Forschungsgemeinschaft (German Research Foundation) project ID: 324652314 (to Gert Bange)Deutsche Forschungsgemeinschaft (German Research Foundation) SFB1286 (project ID: 317475864)Deutsche Forschungsgemeinschaft (German Research Foundation) SFB1565 (project ID: 469281184/P03)Deutsche Forschungsgemeinschaft (German Research Foundation) SFB1565 (project ID: 469281184/P17)European Molecular Biology Organization (EMBO) EMBO YIP
6 · The paper itself

Abstract

The ubiquitin system regulates eukaryotic physiology by modifying myriad substrate proteins. Substrate specificity and the assembly of ubiquitin signals are determined by ubiquitin ligases, some of which also modify non-protein biomolecules. Here we expand this substrate realm, revealing that the human ligase HUWE1 can target drug-like small molecules. We demonstrate that compounds previously reported as HUWE1 inhibitors present substrates of their target ligase. Compound ubiquitination is driven by the canonical catalytic cascade, linking ubiquitin to the compound's primary amino group. In vitro, the modification is selectively catalyzed by HUWE1, allowing the compounds to compete with protein substrates. We establish cellular detection methods, confirming HUWE1 promotes - but does not exclusively drive - compound ubiquitination in cells. Converting the existing compounds into specific HUWE1 substrates or inhibitors thus requires enhanced specificity. More broadly, our findings open avenues for harnessing the ubiquitin system to transform exogenous small molecules into novel chemical modalities within cells.

Indexed as

Small Molecule LibrariesTumor Suppressor ProteinsUbiquitinationUbiquitin-Protein LigasesHEK293 CellsHumansSubstrate SpecificityUbiquitinHUWE1 protein, humanSmall Molecule LibrariesTumor Suppressor ProteinsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID40897715
PMCPMC12405493

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.