Evidence map›Paper›PMID 40895204›Full record

ArticleCurrent research in structural biology2025

Functional (re)annotation of

Pranavathiyani Gnanasekar, Simran Gambhir, Priyadarshan Kinatukara, Anshu Bhardwaj

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Current research in structural biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pranavathiyani GnanasekarBioinformatics Centre, CSIR-Institute of Microbial Technology (IMTECH), Sector 39A, Chandigarh, 160036, India.
Simran GambhirBioinformatics Centre, CSIR-Institute of Microbial Technology (IMTECH), Sector 39A, Chandigarh, 160036, India.
Priyadarshan KinatukaraSchool of Biosciences, Chanakya University, Bengaluru, Karnataka, 562110, India.
Anshu BhardwajBioinformatics Centre, CSIR-Institute of Microbial Technology (IMTECH), Sector 39A, Chandigarh, 160036, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional annotation of proteins is crucial in understanding the basic biology of organisms. In the context of pathogens, it can provide valuable insights towards its functional landscape contributing to understanding the molecular mechanisms of pathogenesis and survival. In this study, we explored the applications of sequence and AI-driven structure-based methods to functionally (re)annotate

Indexed as

AlphaFoldFoldseekGene ontologyGenome annotationMycobacteroides abscessusStructural annotation

Identifiers

PMID40895204
PMCPMC12396275

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.