Evidence map›Paper›PMID 40894546›Full record

ArticlebioRxiv : the preprint server for biology2025

Genetically encoded tool for manipulation of ATP/ADP ratio in human cells.

Alex E Ekvik, Megan M Kober, Denis V Titov

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Alex E EkvikDepartment of Nutritional Sciences & Toxicology, University of California, Berkeley, CA, USA.ORCID 0009-0006-3082-2867
Megan M KoberDepartment of Nutritional Sciences & Toxicology, University of California, Berkeley, CA, USA.
Denis V TitovDepartment of Nutritional Sciences & Toxicology, University of California, Berkeley, CA, USA.ORCID 0000-0001-5677-0651

Funding

Genetically encoded tools for manipulation of metabolism in vivoDP2GM132933 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI TITOV, DENIS VASILIEVICH · 2018 to 2018
$2.4M
Toward a quantitative understanding of metabolic homeostasisR35GM152114 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Denis Vasilievich Titov · 2024 to 2026
$1.4M
NIGMS NIH HHS DP2 GM132933NIGMS NIH HHS R35 GM152114
6 · The paper itself

Abstract

The ability of cells to power energy-demanding processes depends on maintaining the ATP hydrolysis reaction a billion-fold away from equilibrium. Cells respond to changes in energy state by sensing changes in ATP, ADP, AMP, and inorganic phosphate. A key barrier to a better understanding of the maintenance of energy homeostasis is a lack of tools for direct manipulation of energy state in living cells. Here, we report the development of ATPGobble-a genetically encoded tool for controlling cellular ATP hydrolysis rate. We validated ATPGobble by showing that it doubles the energy demand, decreases [ATP]/[ADP] and [ATP]/[AMP] ratios, and activates AMPK activity in human cells. We then used ATPGobble to systematically characterize the proteome and phosphoproteome changes caused by direct manipulation of the energy state. Our results establish ATPGobble as a powerful approach for dissecting the regulatory roles of energy state in human cells, opening new opportunities to study how cellular energy state governs physiology, stress responses, and disease processes.

Identifiers

PMID40894546
PMCPMC12393285

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.