Evidence map›Paper›PMID 40894490›Full record

ArticleFrontiers in plant science2025

Genomic insights into host-associated variants and transmission features of a ToBRFV isolate from Mexico.

Erika Janet Zamora-Macorra, Daniel Leobardo Ochoa-Martínez, Claudia Yaritza Chavarín-Camacho, Rosemarie W Hammond, Katia Aviña-Padilla

Abstract read
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Molecular Characterization ofPlants (Basel, Switzerland) · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Erika Janet Zamora-MacorraInvernadero de virus fitopatógenos. Universidad Autónoma Chapingo, Preparatoria Agrícola, Texcoco, Mexico.
Daniel Leobardo Ochoa-MartínezLaboratorio de virus fitopatógenos, Colegio de Postgraduados, Fitopatología, Texcoco, Mexico.
Claudia Yaritza Chavarín-CamachoInvernadero de virus fitopatógenos. Universidad Autónoma Chapingo, Preparatoria Agrícola, Texcoco, Mexico.
Rosemarie W HammondMolecular Plant Pathology Laboratory, United States Department of Agriculture (USDA), Agricultural Research Service, Beltsville Agricultural Research Center, Beltsville, MD, United States.
Katia Aviña-PadillaLaboratorio de Bioinformática y Redes Complejas, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (IPN), Departamento de Ingeniería Genética, Unidad Irapuato, Irapuato, Guanajuato, Mexico.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato brown rugose fruit virus (ToBRFV) poses a global threat to tomato and pepper production due to its high transmissibility and adaptability. Understanding its genomic features and transmission mechanisms is critical for effective disease management. We characterized the genome and biological properties of a ToBRFV isolate from Mexico. Comparative genomic analyses were conducted using 100 global genomes, with particular focus on single nucleotide variants (SNVs) and their distribution across different host species. Phylogenetic analysis and experimental bioassays, including seed transmission tests, were also performed. Phylogenetic analysis revealed genetic proximity between the Mexican isolate and strains from Mexico, USA, Canada, Israel, and China, indicating shared transmission routes. Genomic comparisons confirmed general sequence stability, but SNVs were found in the 126-kDa replicase, particularly within the methyltransferase domain. These SNVs exhibited host-associated patterns, with conserved profiles in tomato and unique substitutions in

Indexed as

agricultural biosecuritygenomic variabilityhost-specific adaptationseed-borne transmissionsingle nucleotide variantsSNVsToBRFVtomato

Identifiers

PMID40894490
PMCPMC12394481

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.