Evidence map›Paper›PMID 40893723›Full record

ArticleFrontiers in fungal biology2025

The transcriptional coordination of functional gene clusters is dependent on multiple chromatin remodelers in a haploid strain of the budding yeast,

Abtsam A Baadani, Gabrielle F Coon, Christopher Bui, Mary C Chidester, Reem S Eldabagh, James T Arnone

Abstract read
In one paragraph

Article in Frontiers in fungal biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Abtsam A Baadani *Department of Biological and Environmental Sciences, Le Moyne College, Syracuse, NY, United States.
Gabrielle F Coon *Department of Biological and Environmental Sciences, Le Moyne College, Syracuse, NY, United States.
Christopher BuiDepartment of Biological and Environmental Sciences, Le Moyne College, Syracuse, NY, United States.
Mary C ChidesterDepartment of Biological and Environmental Sciences, Le Moyne College, Syracuse, NY, United States.
Reem S EldabaghDepartment of Chemistry, William Paterson University, Wayne, NJ, United States.
James T ArnoneDepartment of Biological and Environmental Sciences, Le Moyne College, Syracuse, NY, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The organization of functionally related gene families oftentimes exhibits a non-random genomic distribution as gene clusters that are prevalent throughout divergent eukaryotic organisms. The molecular and cellular functions of the gene families where clustering has been identified vary, and include those involved in basic metabolism, secondary metabolite biosynthesis, and large gene families (e.g. ribosomal proteins). Many of these gene families exhibit transcriptional coregulation, however the roles that clustering plays and the mechanism(s) underlying co-expression are currently understudied. A comprehensive characterization of these relationships would allow for a greater understanding of the implications of genetic editing and engineering to minimize undesired consequences. Here we report the impact of gene clustering and genomic positioning on the expression of large, coregulated gene families in a haploid strain of the budding yeast,

Indexed as

biosynthetic gene clusterschromatin remodelingfunctional gene clustersposition effectsSaccharomyces cerevisiaetranscriptional co-expression

Identifiers

PMID40893723
PMCPMC12394982

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.