Evidence map›Paper›PMID 40892894›Full record

ArticlePloS one2025

Ex-vivo Raman spectroscopy and AI-based classification of soft tissue sarcomas.

Maede Boroji, Vahid Danesh, David Barrera, Elizabeth Lee, Paul G Arauz, Renee F Farrell, Brendan F Boyce, Fazel A Khan, Imin Kao

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Maede BorojiDepartment of Mechanical Engineering, Stony Brook University, Stony Brook, New York, United States of America.ORCID https://orcid.org/0009-0000-2295-8111
Vahid DaneshDepartment of Mechanical Engineering, Stony Brook University, Stony Brook, New York, United States of America.ORCID https://orcid.org/0009-0005-9235-3472
David BarreraDepartment of Pathology and Laboratory Medicine, Stony Brook University Hospital, Stony Brook, New York, United States of America.
Elizabeth LeeDepartment of Pathology and Laboratory Medicine, Stony Brook University Hospital, Stony Brook, New York, United States of America.
Paul G ArauzDepartment of Orthopaedic Surgery, Stony Brook University Hospital, Stony Brook, New York, United States of America.ORCID https://orcid.org/0000-0002-8724-7035
Renee F FarrellDepartment of Radiation Oncology, Stony Brook University Hospital, Stony Brook, New York, United States of America.
Brendan F BoyceDepartment of Pathology and Laboratory Medicine, Stony Brook University Hospital, Stony Brook, New York, United States of America.
Fazel A KhanDepartment of Orthopaedic Surgery, Stony Brook University Hospital, Stony Brook, New York, United States of America.
Imin KaoDepartment of Mechanical Engineering, Stony Brook University, Stony Brook, New York, United States of America.ORCID https://orcid.org/0000-0003-1658-9166

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soft tissue sarcomas (STS) are a diverse and rare group of malignant tumors arising from the connective tissues of the body, including fibrous tissue, muscles, fat, nerves, and blood vessels. The heterogeneity and infrequency of these tumors pose significant challenges in both diagnosis and treatment. Surgical resection remains the primary treatment strategy, often complemented by radiation or chemotherapy, contingent upon the tumor's size, location, and stage. However, current methods for assessing intraoperative margins are limited, underscoring the need for improved approaches that enhance both efficiency and accuracy. This study investigates the potential of microscopic Raman spectroscopy for distinguishing between different subtypes of soft tissue sarcomas, benign tumors, and normal tissue. Ex-vivo Raman measurements were conducted using a 633 nm excitation wavelength on samples obtained from surgical resections of seven patients (286,672 spectra). After pre-processing of the data, a custom ResNet architecture was developed to accurately classify the different tissue types, achieving an overall weighted accuracy of 97.1% and a clinical alert rate of 1.46%, a critical metric for quantifying the misclassification of malignant tissues. These findings suggest that single Raman spectra could serve as a rapid, non-invasive tool for surgical guidance, aiding in the precise identification of abnormal tissue types and margins.

Indexed as

SarcomaSoft Tissue NeoplasmsSpectrum Analysis, RamanAdultFemaleHumansMaleMiddle Aged

Identifiers

PMID40892894
PMCPMC12404501

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.