Evidence map›Paper›PMID 40891323›Full record

ArticleNeuro-oncology2025

Genomics correlates of brain metastasis and progression in colorectal cancer.

Chengcheng Gui, Henry S Walch, Kirin D Mueller, Lillian A Boe, Anna Skakodub, Emily Miao, Ishaani Khatri, Rahul Kumar, Michel Padilla Mazzeo, Junchao Shen and 20 more

Abstract read
In one paragraph

Article in Neuro-oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Chengcheng GuiDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-3053-5973
Henry S WalchMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kirin D MuellerDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Lillian A BoeDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Anna SkakodubDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Emily MiaoDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ishaani KhatriDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Rahul KumarDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michel Padilla MazzeoDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Junchao ShenDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Claire CooperDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Mitchell ParkerDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Audree HsuDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Roshal R PatelDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
A Turan IlicaDepartment of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Joseph N StemberDepartment of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jordan E EichholzMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Rabih Bou NassifDepartment of Neurological Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kenny K H YuDepartment of Neurological Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jessica A WilcoxDepartment of Neurology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Paolo MancaOncologia Medica 1, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Yao YuDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Yoshiya YamadaDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-1212-2331
Brandon S ImberDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-1281-5915
Steven B MaronDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michael B FooteDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Walid K ChatilaMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Rona YaegerDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-7233-5454
Nikolaus SchultzMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Luke R G PikeDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-9622-7442

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

backgroundBrain metastasis (BM) in colorectal cancer (CRC) is a rare event that undermines longevity and neurocognitive function. However, the molecular basis of BM in CRC is poorly understood. We analyzed next-generation sequencing (NGS) from patients with CRC to identify genomic features associated with BM and intracranial progression (IP).

methodsPatients with CRC who had NGS between 2014 and 2024 were included. Sequenced tumor specimens were classified by the anatomic site of biopsy as primary tumors (PT), extracranial metastases (EM), or BM. Sequenced PT specimens were compared to identify genomic differences between patients who did and did not develop BM. Among patients with BM, sequenced tumor specimens were compared to identify genomic differences by anatomic site. Sequenced BM samples were compared to identify genomic differences between patients who did and did not experience IP after BM-directed local therapy.

resultsThis analysis included 5526 patients with NGS of CRC, including 269 patients with BM. PT of patients who developed BM more frequently contained alterations in the KRAS, BRAF, and SMAD4, compared with PT of patients without BM. Among patients with BM, resected BM specimens had greater tumor mutation burden, fraction of genome altered, and frequency of TP53, SMAD4, and MYC alterations, compared with extracranial tumor specimens. Patients with BM carrying SMAD4 or PI3K pathway alterations showed a trend toward earlier IP after BM-directed therapy.

conclusionsThis study identifies novel genomic associations with intracranial metastasis and progression in CRC, suggesting a potential basis for personalized clinical management.

Indexed as

Biomarkers, TumorBrain NeoplasmsColorectal NeoplasmsGenomicsMutationAdultAgedAged, 80 and overDisease ProgressionFemaleFollow-Up StudiesHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedPrognosisBiomarkers, Tumorbrain metastasiscancer genomicscentral nervous system tropismcolorectal cancernext-generation sequencing

Identifiers

PMID40891323
PMCPMC12916729

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.