Evidence map›Paper›PMID 40890987›Full record

ArticleProteins2026

Updates to the CASP Infrastructure in 2024.

Andriy Kryshtafovych, Maciej Milostan, Marc F Lensink, Sameer Velankar, Alexandre M J J Bonvin, John Moult, Krzysztof Fidelis

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Proteins, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Modeling Alternative Conformational States in CASP16.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andriy KryshtafovychGenome Center, University of California, Davis, Davis, California, USA.ORCID https://orcid.org/0000-0001-5066-7178
Maciej MilostanInstitute of Computing Science, Poznan University of Technology, Poznan, Poland.
Marc F LensinkUniversity of Lille, CNRS, UMR 8576-UGSF-Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France.ORCID https://orcid.org/0000-0003-3957-9470
Sameer VelankarProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.
Alexandre M J J BonvinBijvoet Centre for Biomolecular Research, Faculty of Science-Chemistry, Utrecht University, Utrecht, the Netherlands.
John MoultInstitute for Bioscience and Biotechnology Research, University of Maryland, College Park, Maryland, USA.
Krzysztof FidelisGenome Center, University of California, Davis, Davis, California, USA.ORCID https://orcid.org/0000-0002-8061-412X

Funding

Prospective analysis to determine model accuracy performance and boundaries in the post-AlphaFold2 environmentR01GM100482 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIDELIS, KRZYSZTOF A · 2012 to 2025
$11.1M
NIGMS NIH HHS R01 GM100482NIGMS NIH HHS R01GM100482
6 · The paper itself

Abstract

CASP (critical assessment of structure prediction) conducts community experiments to determine the state of the art in calculating macromolecular structures. The CASP data management system is continually evolving to address the changing needs of the experiments. For CASP16, we expanded the infrastructure to enable data handling of newly introduced categories and fully support pilot categories introduced in CASP15. This technical note also documents the integration of the CASP and CAPRI (Critical Assessment of PRedicted Interactions) systems.

Indexed as

Computational BiologyProteinsSoftwareDatabases, ProteinModels, MolecularProtein ConformationProteins3D structure predictionalternative conformationsCASP16protein–ligand complexesprotein structureRNA structure

Identifiers

PMID40890987
PMCPMC12422709

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.