Evidence map›Paper›PMID 40890817›Full record

ArticleEnvironmental microbiome2025

Occupants and surface types drive microbial dynamics in controlled indoor environments.

Jianjian Hou, Makiko Nakajima, Yukiko Nishiuchi, Daisuke Ogura, Atsushi Teramoto, China Kuratomi, Yoko Iwamoto, Yoshiko Okamura, Kazuki Moriguchi, Mateja Dovjak and 4 more

Abstract read
In one paragraph

Article in Environmental microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jianjian HouCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0002-1828-1723
Makiko NakajimaCenter for Holobiome and Built Environment (CHOBE), Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0001-7753-4113
Yukiko NishiuchiCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0002-2973-9285
Daisuke OguraCenter for Holobiome and Built Environment (CHOBE), Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0002-6553-181X
Atsushi TeramotoCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0001-8358-829X
China KuratomiDepartment of Architecture, Graduate School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima, 739-8527, Japan.ORCID http://orcid.org/0009-0005-5674-0766
Yoko IwamotoProgram of Life and Environmental Sciences, Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, 739-8521, Japan.ORCID http://orcid.org/0000-0001-6522-0424
Yoshiko OkamuraProgram of Biotechnology, Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0001-8333-7722
Kazuki MoriguchiProgram of Basic Biology, Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, 739-8526, Japan.
Mateja DovjakCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan.ORCID http://orcid.org/0000-0003-4929-0232
Kento TakayamaSchool of Pharmacy, Showa Medical University, Tokyo, 142-8555, Japan.ORCID http://orcid.org/0000-0002-9268-0802
Yusaku TsugamiNational Institute of Animal Health, National Agriculture and Food Research Organization, Sapporo, 062-0045, Japan.ORCID http://orcid.org/0000-0001-7175-7981
So FujiyoshiCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan. fujiyoshi.so.62w@kyoto-u.jp.ORCID http://orcid.org/0000-0003-4306-332X
Fumito MaruyamaCenter for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, Higashi-Hiroshima, 739-8530, Japan. fumito@hiroshima-u.ac.jp.ORCID http://orcid.org/0000-0003-2347-616X

Funding

Japan Agency for Medical Research and Development 20wm0225012h0001, 21fk0108129h0502, 24fk0108673h0402 and 23wm0225038h0001Japan-Slovenia Research cooperative program between JSPS (No. JPJSBP 120235001) and ARIS (No. BI-JP/23-25-002) JPJSBP 120235001, BI-JP/23-25-002Japan Society for the Promotion of Science 18K19674, 18KK0436, 20H00562, 23H00451The Slovenian Research and Innovation Agency P2-0158
6 · The paper itself

Abstract

backgroundIndoor microbial communities play a critical role in influencing indoor environmental quality and human health and are shaped by occupant activity, surface characteristics, and environmental conditions. While previous studies have examined these factors individually, systematic evaluations of their combined interactions, particularly involving Heating, Ventilation, and Air Conditioning (HVAC) and drainage systems, remain limited. This controlled, long-term (1.5-year) investigation assessed how human occupancy, surface moisture (dry vs. wet), aquaponics (soilless plant-aquarium systems), and environmental parameters (humidity, ventilation, and seasonal variations) influence bacterial and eukaryotic dynamics in tightly sealed residential units.

resultsContinuous air-conditioner operation without fresh-air intake led to elevated CO₂ levels during occupancy and pronounced seasonal humidity fluctuations, emphasizing the need for improved ventilation and adaptive humidity control in compact urban residences. Amplicon sequencing revealed higher microbial diversity on dry surfaces (aerosols, air-conditioner filter dust, and floor dust) than on wet surfaces (waste drains and showerheads). Wet environments supported biofilm-associated taxa adapted to moist conditions (e.g., Methylobacterium, Vermamoeba). Human occupancy significantly enriched air-conditioner filter dust with opportunistic bacteria (e.g., Finegoldia and Streptococcus), underscoring occupant-driven microbial accumulation via recirculated air. Additionally, the small-scale aquaponic system had minimal measurable influence on microbial composition at the room scale, suggesting limited aerosolization or dispersal under typical usage conditions. Indoor relative humidity was significantly correlated with microbial diversity in air systems, notably enhancing moisture-adapted taxa such as Sphingomonas during humid seasons. Seasonal variations markedly influenced eukaryotic communities (e.g., pollen influx), whereas bacterial communities were more strongly influenced by human occupancy.

conclusionsThese findings highlight the critical role of human-driven microbial accumulation in air-conditioner filters and the distinct microbial profiles associated with dry and wet indoor surfaces. Although small-scale aquaponics demonstrated minimal room-wide microbial impact, its potential localized influence warrants further exploration. These insights offer practical guidance for targeted hygiene protocols, HVAC system maintenance, and building design strategies aimed at improving indoor microbial quality and supporting occupant health.

Indexed as

AquaponicsBuilt environmentEukaryoteHuman healthHumidityIndoor microbiomeOccupancySeasonSurface moisture

Identifiers

PMID40890817
PMCPMC12403373

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.