Evidence map›Paper›PMID 40890525›Full record

ArticleNature structural & molecular biology2025

Interactions between the genome and the nuclear lamina are multivalent and cooperative.

Lise Dauban, Mathias Eder, Marcel de Haas, Vinícius H Franceschini-Santos, J Omar Yañez-Cuna, Moreno Martinovic, Tom van Schaik, Christ Leemans, Hans Teunissen, Koen Rademaker and 4 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. The impact of alterations in lamin A on genome integrity.Mutation research. Reviews in mutation research
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Lise DaubanDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands. lise.dauban@igh.cnrs.fr.ORCID http://orcid.org/0000-0002-7631-5610
Mathias EderDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0009-0001-6845-1727
Marcel de HaasDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Vinícius H Franceschini-SantosDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
J Omar Yañez-CunaDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0009-0008-8792-9491
Moreno MartinovicDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Tom van SchaikDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Christ LeemansDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Hans TeunissenDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Koen RademakerDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Miguel Martinez AraDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Martijn VerkuilenDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0009-0009-3320-9197
Elzo de WitDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-2883-1415
Bas van SteenselDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands. b.v.steensel@nki.nl.ORCID http://orcid.org/0000-0002-0284-0404

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lamina-associated domains (LADs) are megabase-sized genomic regions that interact with the nuclear lamina (NL). It is not yet understood how their interactions with the NL are encoded in their DNA. Here we designed an efficient LAD 'scrambling' approach, based on transposon-mediated local hopping of loxP recombination sites, to generate series of large deletions and inversions that span LADs and flanking sequences. Mapping of NL interactions in these rearrangements revealed that, in mouse embryonic stem cells, a single LAD contacts the NL through multiple regions that act cooperatively or redundantly; some have more affinity for the NL than others and can pull neighboring sequences to the NL. Genes drawn toward the NL showed often but not always reduced expression and increased H3K9me3 levels. Furthermore, neighboring LADs can cooperatively interact with the NL when placed close enough to each other. These results elucidate principles that govern the positioning of megabase-sized genomic regions inside the cell nucleus.

Indexed as

GenomeNuclear LaminaAnimalsDNA Transposable ElementsEmbryonic Stem CellsHistonesMiceMouse Embryonic Stem CellsDNA Transposable ElementsHistones

Identifiers

PMID40890525
PMCPMC12618260

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.