Evidence map›Paper›PMID 40888046›Full record

ArticleYeast (Chichester, England)2025

Taxogenomic Analysis of a Novel Yeast Species, Lachancea rosae Sp. Nov. F.A., Isolated From the Wild Rose Rosa californica.

Yakendra Bajgain, Quinn K Langdon, Cara M Krien, Martin Jarzyna, Kelly V Buh, Max A B Haase, Anthony Pasles, John F Wolters, Marizeth Groenewald, Chris Todd Hittinger and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Yeast (Chichester, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yakendra BajgainBiology Department Villanova University, Villanova, Pennsylvania, USA.
Quinn K LangdonLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Cara M KrienBiology Department Villanova University, Villanova, Pennsylvania, USA.
Martin JarzynaLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Kelly V BuhLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Max A B HaaseLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Anthony PaslesBiology Department Villanova University, Villanova, Pennsylvania, USA.
John F WoltersLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Marizeth GroenewaldWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Chris Todd HittingerLaboratory of Genetics, Wisconsin Energy Institute, Center for Genomic Science Innovation, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0001-5088-7461
Dana A OpulenteBiology Department Villanova University, Villanova, Pennsylvania, USA.

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
NIGMS NIH HHS T32 GM007133We thank the University of Wisconsin Biotechnology Center DNA Sequencing Facility for providing DNA sequencing facilities and services; Bill Vagt for providing the samples from which the strain was isolated; Maudy Smith for providing the photos showing the vegetative yeast cells, asci, and ascospores; and the late Cletus P. Kurtzman for yeast taxonomy advice. This material is based upon work supported by the National Science Foundation under Grant Nos. DEB-1253634, DEB-1442148, DEB-2110403, and DGE-1256259; the USDA National Institute of Food and Agriculture Hatch Project No. 7005101, in part by the DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science No. DE-SC0018409), and start-up funds for the Opulente Lab from Villanova University. QKL was also partly supported by the Predoctoral Training Program in Genetics, funded by the National Institutes of Health (5T32GM007133). CTH is an H. I. Romnes Faculty Fellow, supported by the Office of the Vice Chancellor for Research with funding from the Wisconsin Alumni Research Foundation (WARF).
6 · The paper itself

Abstract

A novel Saccharomycotina yeast strain, yHQL494, was isolated from the rose hip of the wild rose Rosa californica from Castle Crags State Park, California, USA. Phylogenetic analyses of both whole genome data and the sequences from the D1/D2 region of the large ribosomal subunit (LSU) rRNA gene placed strain yHQL494 within the genus Lachancea and grouped it into a clade with Lachancea lanzarotensis and Lachancea meyersii. Taxogenomic analyses were conducted on publicly available genome sequences to gain a deeper insight into the carbon and nitrogen gene-trait associations across the Lachancea clade. The results of these analyses were found to be consistent across Lachancea species. Growth assays and microscopic analyses were conducted to determine the physiological characteristics of strain yHQL494, including the presence of hyphae or pseudohyphae, ascospore formation, fermentation abilities, and assimilation of carbon and nitrogen compounds. Based on the phenotypic and genomic characteristics of the strain yHQL494

Indexed as

Genome, FungalRosaSaccharomycetalesCaliforniaCarbonDNA, FungalFermentationNitrogenPhylogenyCarbonDNA, FungalNitrogen

Identifiers

PMID40888046
PMCPMC12587028

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.