Evidence map›Paper›PMID 40887518›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the caddisfly Stenopsyche angustata (Insecta: Trichoptera).

Yujun Wang, Xinze Liu, Honglin Qin, Xifa Zhong, Yimin Li, Yuting Qin, Yueying Wu, Yichuan Zhang, Yuwei He, Jisheng Li and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yujun WangHebei Sericulture Industry Technology Innovation Center, Hebei Universities Characteristic sericulture Application Technology Research and Development Center, Sericultural Research Institute, Department of Biological Science and Technology, Chengde Medical University, Anyuan Road, Chengde, 067000, Hebei, China.
Xinze LiuHebei Sericulture Industry Technology Innovation Center, Hebei Universities Characteristic sericulture Application Technology Research and Development Center, Sericultural Research Institute, Department of Biological Science and Technology, Chengde Medical University, Anyuan Road, Chengde, 067000, Hebei, China.
Honglin QinGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Xifa ZhongGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Yimin LiGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Yuting QinGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Yueying WuGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Yichuan ZhangGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Yuwei HeGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China.
Jisheng LiHebei Sericulture Industry Technology Innovation Center, Hebei Universities Characteristic sericulture Application Technology Research and Development Center, Sericultural Research Institute, Department of Biological Science and Technology, Chengde Medical University, Anyuan Road, Chengde, 067000, Hebei, China. jshlee@cdmc.edu.cn.
Hong WangGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi,Ocean College, Beibu Gulf University, Qinzhou, 535000, China. gxqzmr606@hotmail.com.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32470554, 42266004, 31972873
6 · The paper itself

Abstract

Stenopsyche angustata, a species within the diverse order Trichoptera, is widely distributed across freshwater environments and exhibits unique ecological traits that make it an ideal subject for studying adaptive evolution. In this study, we employed Illumina second-generation sequencing, PacBio third-generation sequencing, along with high-throughput chromosome conformation capture (Hi-C) technologies to generate raw sequencing data and construct chromosome-level genome assemblies of S. angustata. The final genome assembly size was 510.47 Mb, with scaffold N50 length of 39.81 Mb. The genome was successfully anchored to 13 pseudochromosomes, and a total of 10,699 protein-coding genes were identified. The genome contained 44.92% repeat sequences and 1,004 non-coding RNAs. Moreover, a total of 10,699 protein-encoding genes were predicted, representing 97.7% of the total genes. This comprehensive genomic analysis unveil crucial details about the genetic makeup of S. angustata, providing a foundation for understanding of the evolutionary processes and ecological functions of this species.

Indexed as

Chromosomes, InsectGenome, InsectInsectaAnimalsHigh-Throughput Nucleotide Sequencing

Identifiers

PMID40887518
PMCPMC12399763

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.