Evidence map›Paper›PMID 40884490›Full record

ReviewPlant & cell physiology2025

Current perspectives on proton and electron transfer pathways in photosystem II water oxidation.

Hiroshi Ishikita, Keisuke Saito

Abstract readReview
In one paragraph

Review in Plant & cell physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hiroshi IshikitaDepartment of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan.ORCID 0000-0002-5849-8150
Keisuke SaitoDepartment of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan.ORCID 0000-0002-2293-9743

Funding

Interdisciplinary Computational Science Program in CCS, University of TsukubaJapan Society for the Promotion of Science JP23H02444Japan Society for the Promotion of Science JP23H04963Japan Society for the Promotion of Science JP24K01986
6 · The paper itself

Abstract

Photosystem II catalyzes the light-driven oxidation of water, progressing via sequential oxidation states (S-states) of the Mn4CaO5 cluster. Among structural snapshots of intermediate S-states obtained using X-ray free-electron laser (XFEL) crystallography, two-flash XFEL structures assigned to the S3 state reveal an additional oxygen atom (O6) near the O5 site of the cluster, leading to proposals that O6 is incorporated as a new substrate water molecule during the S2 to S3 transition. However, recent re-analyses of the XFEL data highlight potential complications, including conformational heterogeneity, refinement bias, and possible radiation-induced artifacts. In addition, many proposals have been put forwarded without evaluating associated proton and electron transfer processes, despite the fact that water oxidation involves the stepwise removal of protons and electrons. Here, we shed light on electron and proton transfer events during the photocycle by summarizing mechanistic proposals, including those in which O6 is not incorporated. If the remaining reduced site, Mn1(III), is oxidized during the S2 to S3 transition, this step encounters difficulties due to its high redox potential and poor electronic coupling with the electron acceptor, D1-Tyr161 (TyrZ). Efficient proton transfer requires pre-existing H-bond networks, which are absent near O5 and O6, imposing kinetic penalties on proton release. Assigning O6 as a substrate oxygen would imply that O5 is the other substrate, requiring its deprotonation earlier in the Kok cycle.

Indexed as

Photosystem II Protein ComplexProtonsWaterElectron TransportOxidation-ReductionPhotosystem II Protein ComplexProtonsWaterelectronic couplinglow-barrier hydrogen bondoxygen evolutionprotein crystal structureproton-coupled electron transferredox potential

Identifiers

PMID40884490
PMCPMC12661316

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.