Evidence map›Paper›PMID 40884181›Full record

ArticleThe plant genome2025

Mapping QTLs for PHS resistance and development of a deep learning model to measure PHS rate in japonica rice.

Soojin Jun, Mi Hyun Cho, Hyoja Oh, Younguk Kim, Dong Kyung Yoon, Myeongjin Kang, Hwayoung Kim, Seon-Hwa Bae, Song Lim Kim, Jeongho Baek and 5 more

Abstract read
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Soojin JunDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.ORCID https://orcid.org/0009-0009-4768-4685
Mi Hyun ChoDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Hyoja OhDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Younguk KimDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Dong Kyung YoonDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Myeongjin KangDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Hwayoung KimDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Seon-Hwa BaeDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Song Lim KimDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Jeongho BaekDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
HwangWeon JeongDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Jae Il LyuDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Gang-Seob LeeDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.
Changsoo KimDepartment of Crop Science, Chungnam National University, Daejeon, Republic of Korea.ORCID https://orcid.org/0000-0002-3596-2934
Hyeonso JiDepartment of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Republic of Korea.ORCID https://orcid.org/0000-0002-9571-0202

Funding

National Institute of Agricultural Sciences PJ01728901
6 · The paper itself

Abstract

Rice (Oryza sativa L.) is a staple food for more than half of the global population. Preharvest sprouting (PHS), which reduces yield and grain quality, presents a major challenge for rice production. The development of PHS-resistant varieties is a major goal in japonica rice breeding. A deep learning model to automate PHS rate measurement was developed using the YOLOv8 algorithm. The model had high mean average precision (0.974). PHS rate measurements made using the model correlated strongly with manual measurements (R

Indexed as

Deep LearningOryzaQuantitative Trait LociChromosome MappingChromosomes, PlantGenotypePlant BreedingPolymorphism, Single Nucleotide

Identifiers

PMID40884181
PMCPMC12397900

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.