Evidence map›Paper›PMID 40883722›Full record

ArticleBMC medicine2025

Whole genome transcriptional analysis of intestinal biopsies and blood cells indicate genes involved in antioxidant defense systems, amino acid metabolism and antigen presentation in the pathogenesis of celiac disease.

Åsa Torinsson Naluai, Shafir Sabbag, Sanna Abrahamsson, Audur H Gudjónsdóttir, Henrik Arnell, Daniel Agardh

Abstract read
In one paragraph

Article in BMC medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Åsa Torinsson NaluaiDepartment of Laboratory Medicine, Institute of Biomedicine, Sahlgrenska Academy at the University of Gothenburg, Gothenburg, Sweden. asa.torinsson.naluai@gu.se.
Shafir SabbagDepartment of Laboratory Medicine, Institute of Biomedicine, Sahlgrenska Academy at the University of Gothenburg, Gothenburg, Sweden.
Sanna AbrahamssonCore Facilities, University of Gothenburg, Gothenburg, Sweden.
Audur H GudjónsdóttirPediatric Gastroenterology, Hepatology and Nutrition, Queen Silvia Children's Hospital, Sahlgrenska University Hospital, Gothenburg, Sweden.
Henrik ArnellPediatric Gastroenterology, Hepatology and Nutrition, Karolinska University Hospital and Women's and Children's Health, Karolinska Institute, Stockholm, Sweden.
Daniel AgardhCeliac disease and Diabetes Unit, Department of Clinical Sciences, Lund University, Malmö, Sweden.

Funding

The Swedish Research Council 023-2026 (2022-00537)
6 · The paper itself

Abstract

backgroundCeliac disease is associated with HLA-risk haplotypes, but non-HLA genes and environmental factors are also linked to disease susceptibility. In this study, we explore the molecular pathways involved in celiac disease by analyzing the differential expression of genes in both the gut and peripheral blood across various celiac disease phenotypes.

methodsWhole genome RNA sequencing was performed on 283 samples from intestinal mucosa and peripheral blood from 72 cases with either active, potential, or treated celiac disease and 73 disease controls. Enrichr pathway analysis of top differentially expressed genes was performed.

resultsOverall, 7565 genes in intestinal biopsies and 542 genes in blood samples were differentially expressed between cases and controls. Compared with controls, immunoglobulin heavy variable 5-51 (IGHV5-51) (p = 1.05 × 10

conclusionsDifferentially expressed genes in cases and controls indicate crosstalk between molecular pathways involved in antioxidant defense, immune regulation, and nutrient signaling in the pathogenesis of celiac disease.

Indexed as

Amino AcidsAntioxidantsCeliac DiseaseIntestinal MucosaAdolescentAdultBiopsyCase-Control StudiesFemaleGene Expression ProfilingHumansMaleMiddle AgedProtein Glutamine gamma Glutamyltransferase 2TransglutaminasesWhole Genome SequencingAmino AcidsAntioxidantsProtein Glutamine gamma Glutamyltransferase 2TransglutaminasesAutoimmunityCeliac diseaseHLAMammalian target of rapamycinMHCMTORC1Oxidative stressRNA sequencingSmall bowel

Identifiers

PMID40883722
PMCPMC12398127

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.