Evidence map›Paper›PMID 40883597›Full record

ArticleCommunications chemistry2025

Infrared and ultraviolet spectroscopic characterization of a key intermediate during DNA repair by (6-4) photolyase.

Daichi Yamada, Ai Kadono, Tatsumi Maeno, Wataru Sato, Sachiko Yanagisawa, Toshihiko Hamamura, Yasuteru Shigeta, Junpei Yamamoto, Minoru Kubo

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Daichi YamadaDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan.
Ai KadonoDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan.
Tatsumi MaenoDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan.
Wataru SatoDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan.
Sachiko YanagisawaDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan.
Toshihiko HamamuraDivision of Chemistry, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka, Japan.
Yasuteru ShigetaCenter for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0000-0002-3219-6007
Junpei YamamotoDivision of Chemistry, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka, Japan.ORCID http://orcid.org/0000-0002-5036-991X
Minoru KuboDepartment of Life Science, Graduate School of Science, University of Hyogo, Ako, Hyogo, Japan. minoru@sci.u-hyogo.ac.jp.ORCID http://orcid.org/0000-0002-1470-942X

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJFR2057MEXT | Japan Society for the Promotion of Science (JSPS) JP19H05784MEXT | Japan Society for the Promotion of Science (JSPS) JP20H05442MEXT | Japan Society for the Promotion of Science (JSPS) JP22H04751MEXT | Japan Society for the Promotion of Science (JSPS) JP24H02263
6 · The paper itself

Abstract

Ultraviolet (UV) irradiation of DNA causes genotoxic photolesions, such as carcinogenic pyrimidine(6-4)pyrimidone photoproducts ((6-4)PPs). In many organisms, (6-4)PPs are repaired by (6-4) photolyases, which contain a flavin chromophore and use blue light energy to initiate the catalytic reaction. Although (6-4)PP repair has been shown to require the input of two successive photons, details of the mechanism remain elusive. Here, we applied recently developed time-resolved UV and infrared (IR) spectroscopic techniques to capture a key intermediate that awaits the second photon in the repair reaction of Xenopus laevis (6-4) photolyase. The results indicate that the intermediate is formed within 500 μs following the initial absorption of a photon and contains a four-membered oxetane ring that bridges two adjacent pyrimidine bases. These findings shed light on the molecular basis of DNA repair involving two-photon activation.

Identifiers

PMID40883597
PMCPMC12397333

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