Evidence map›Paper›PMID 40883508›Full record

ArticleEMBO reports2025

Direct visualization of HIV-1 core nuclear import and its interplay with the nuclear pore.

Zhen Hou, Stanley Fronik, Yao Shen, Long Chen, Christopher Thompson, Sarah Neumann, Peijun Zhang

Abstract read
In one paragraph

Article in EMBO reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. HIV-1 capsid interactions with Nuclear Pore Complex components support nuclear entry via affinity gradient.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Open questions in enterovirus uncoating.Journal of virology · 2026
    Review
  4. Review
  5. Article
  6. Review
  7. Mechanistic insights into lenacapavir-induced off-pathway HIV-1 capsid assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Article
  10. bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhen Hou *Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-6701-144X
Stanley Fronik *Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0009-0006-5275-1633
Yao Shen *Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0002-0278-0771
Long ChenDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Christopher ThompsonMaterials & Structural Analysis, Thermo Fisher Scientific, Eindhoven, The Netherlands.ORCID 0000-0003-2240-093X
Sarah NeumannMaterials & Structural Analysis, Thermo Fisher Scientific, Eindhoven, The Netherlands.
Peijun ZhangDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. peijun.zhang@strubi.ox.ac.uk.ORCID 0000-0003-1803-691X

Funding

Project 3. IntegrationU54AI170791 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Zandrea Ambrose · 2022 to 2026
$30.6M
Correlative cryoET of the HIV-1 integration targeting in native T-lymphocytesR21AI184080 · NIAID · UNIVERSITY OF OXFORD · PI ZHANG, PEIJUN · 2024 to 2025
$285k
European Resuscitation Council (ERC) 101021133HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21AI184080HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U54AI170791NIAID NIH HHS R21 AI184080NIAID NIH HHS U54 AI170791UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/S003339/1Wellcome TrustWellcome Trust (WT) 206422/Z/17/ZWellcome Trust (WT) 311427/Z/24/Z
6 · The paper itself

Abstract

Direct visualization of HIV-1 nuclear import through the nuclear pore complex (NPC) presents a technical challenge due to the rarity of this process. To enable systematic investigation, we developed a robust in situ system that mimics HIV-1 nuclear import in a near-native context using isolated HIV-1 virus like particles (VLP) cores and permeabilized CD4 + T lymphocyte (CEM) cells. This approach supports docking and translocation of abundant viral cores through nuclear pores into the nucleus. For high-resolution visualization, we implemented an integrated correlative approach to guide cryo-focused ion beam (cryo-FIB) milling and cryo-electron tomography (cryo-ET) imaging, enabling precise targeting and structural characterization of individual nuclear import events. Using this workflow, we visualized 510 HIV-1 VLP cores at distinct stages of nuclear import, capturing key snapshots of the full progression of nuclear import. Subsequent statistical and structural analyses allow classification of core morphologies and identification of translocation-associated remodeling in nuclear pores. This work provides a methodological foundation for dissecting HIV-1 and potentially other viruses nuclear import processes and post-entry events in a controlled and quantitative manner.

Indexed as

Active Transport, Cell NucleusHIV-1Nuclear PoreCD4-Positive T-LymphocytesCell LineCell NucleusCryoelectron MicroscopyElectron Microscope TomographyHIV InfectionsHumansCryo-CLEMCryo-ET and Subtomogram AveragingCryo-FIB/SEMHIV-1 Nuclear ImportNuclear Pore

Identifiers

PMID40883508
PMCPMC12592377

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.