Evidence map›Paper›PMID 40882207›Full record

ArticleJMIR medical informatics2025

Natural Language Processing and

Frederic Gaspar, Mehdi Zayene, Claire Coumau, Elliott Bertrand, Marie Bettex, Marie Annick Le Pogam, Chantal Csajka

Abstract readComparative Study
In one paragraph

Article in JMIR medical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Frederic Gaspar *Center for Research and Innovation in Clinical Pharmaceutical Sciences, Rue du Bugnon 19, Lausanne, 1011, Switzerland, 41 763306834.ORCID 0000-0002-0225-7294
Mehdi ZayeneEffixis SA, Lausanne, Switzerland.ORCID 0009-0004-4758-6851
Claire CoumauCenter for Research and Innovation in Clinical Pharmaceutical Sciences, Rue du Bugnon 19, Lausanne, 1011, Switzerland, 41 763306834.ORCID 0000-0002-2303-7848
Elliott BertrandEffixis SA, Lausanne, Switzerland.ORCID 0009-0003-6523-2443
Marie BettexDepartment of Epidemiology and Health Systems, Center for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.ORCID 0009-0005-3593-1395
Marie Annick Le Pogam *Department of Epidemiology and Health Systems, Center for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.ORCID 0000-0003-1672-3644
Chantal Csajka *School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-0660-082X

Funding

Swiss National Science Foundation 407440_167381
6 · The paper itself

Abstract

Background: Bleeding adverse drug events (ADEs), particularly among older inpatients receiving antithrombotic therapy, represent a major safety concern in hospitals. These events are often underdetected by conventional rule-based systems relying on structured electronic medical record data, such as the ICD-10 (International Statistical Classification of Diseases and Related Health Problems 10th Revision) codes, which lack the granularity to capture nuanced clinical narratives. Objective: This study aimed to develop and evaluate a natural language processing (NLP) model to detect and categorize bleeding ADEs in discharge summaries of older adults. Specifically, the model was designed to distinguish between "clinically significant bleeding," "severe bleeding," "history of bleeding," and "no bleeding," and was compared with a rule-based algorithm using ICD-10 codes. Methods: Clinicians manually annotated 400 discharge summaries, comprising 65,706 sentences, into four categories: "no bleeding," "clinically significant bleeding," "severe bleeding," and "history of bleeding." The dataset was divided into a training set (70%, 47,100 sentences) and a test set (30%, 18,606 sentences). Two detection approaches were developed and evaluated: (1) an NLP model using binary logistic regression and support vector machine classifiers, and (2) a traditional rule-based algorithm relying exclusively on predefined ICD-10 codes. To address class imbalance, with most sentences categorized as irrelevant ("no bleeding"), a class-weighting strategy was applied in the NLP model. Model performance was assessed using accuracy, precision, recall, F1-score, and receiver operating characteristic (ROC) curve analyses, with manual annotations as the gold standard. Results: The NLP model significantly outperformed the rule-based approach across all evaluation metrics. At the document level, the NLP model achieved macro-average scores of 0.81 for accuracy and 0.80 for F1-score. Precision was particularly high for detecting severe (0.92) and clinically significant bleeding events (0.87), demonstrating strong classification capability despite class imbalance. ROC analyses confirmed the model's robust diagnostic performance, yielding an area under the curve (AUC) of 0.91 when distinguishing irrelevant sentences from potential bleeding events, 0.88 for identifying historical mentions of bleeding, and notably, 0.94 for differentiating clinically significant from severe bleeding. In contrast, the rule-based ICD-10 model demonstrated high precision (0.94) for clinically significant bleeding but poor recall (0.03) for severe bleeding events, reflecting frequent missed detections. This limitation arose due to its reliance on commonly used ICD-10 codes (eg, gastrointestinal hemorrhage) and inadequate capture of rare severe bleeding conditions such as shock due to hemorrhage. Conclusions: This study highlights the considerable advantage of NLP over traditional ICD-10-based methods for detecting bleeding ADEs within electronic medical records. The NLP model effectively captured nuanced clinical narratives, including severity, negations, and historical bleeding events, demonstrating substantial promise for improving patient safety surveillance and clinical decision-making. Future research should extend validation across multiple institutions, diversify annotated datasets, and further refine temporal reasoning capabilities within NLP algorithms.

Indexed as

HemorrhageInternational Classification of DiseasesNatural Language ProcessingPatient Discharge SummariesAgedAlgorithmsCross-Sectional StudiesElectronic Health RecordsFemaleHumansMalePatient Dischargeadverse drug eventsAIartificial intelligencebleedingcross-sectionaldecision-makingdecision support systemsdeep learningdischarge summarieselderlyelectronic medical recordshealthcarehemorrhageinternational classification of diseaseslogistic regressionmachine learningmedical recordsMLnatural language processingNLPolder adults

Identifiers

PMID40882207
PMCPMC12396801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.