Evidence map›Paper›PMID 40880425›Full record

ArticleAnimal models and experimental medicine2025

Establishment and molecular profiling of a PDX model of a metachronous brain tumor in a patient with constitutional mismatch repair deficiency with biallelic MSH6 variant.

Daniel Antunes Moreno, Bruna Minniti Mançano, Mirella Baroni, Eric Allison Philot, Felipe Antonio de Oliveira Garcia, Murilo Bonatelli, Flávia Escremim de Paula, Iara Viana Vidigal Santana, Gustavo Ramos Teixeira, Mauricio Yamanari and 10 more

Abstract readCase Reports
In one paragraph

Article in Animal models and experimental medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Daniel Antunes MorenoMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Bruna Minniti MançanoDepartment of Pediatric Oncology, Barretos Cancer Hospital, Barretos, Brazil.
Mirella BaroniMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Eric Allison PhilotMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Felipe Antonio de Oliveira GarciaMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Murilo BonatelliDepartment of Molecular Diagnosis, Barretos Cancer Hospital, Barretos, Brazil.
Flávia Escremim de PaulaDepartment of Molecular Diagnosis, Barretos Cancer Hospital, Barretos, Brazil.
Iara Viana Vidigal SantanaDepartment of Pathology, Barretos Cancer Hospital, Barretos, Brazil.
Gustavo Ramos TeixeiraDepartment of Pathology, Barretos Cancer Hospital, Barretos, Brazil.
Mauricio YamanariDepartment of Radiotherapy, Barretos Cancer Hospital, Barretos, Brazil.
Luciane Sussuchi da SilvaMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
André Escremim de PaulaDepartment of Molecular Diagnosis, Barretos Cancer Hospital, Barretos, Brazil.
Augusto Perazzolo AntoniazziDepartment of Oncogenetics, Barretos Cancer Hospital, Barretos, Brazil.
Adrian WilligSOPHIA Genetics, Rolle, Switzerland.
Xiaobin XingSOPHIA Genetics, Rolle, Switzerland.
Zhenyu XuSOPHIA Genetics, Rolle, Switzerland.
Lucas LourençoDepartment of Pediatric Oncology, Barretos Cancer Hospital, Barretos, Brazil.
Carlos Almeida JuniorDepartment of Pediatric Oncology, Barretos Cancer Hospital, Barretos, Brazil.
Silvia Aparecida TeixeiraMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Rui Manuel ReisMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.ORCID 0000-0002-9639-7940

Funding

Barretos Cancer Hospital13/2021Brazilian Ministry of Health (MoH), National Council for Scientific and Technological DevelopmentBrazilian National Program of Genomics and Precision Health - Genomas Brasil MS-SECTICS-Decit/CNPq 16/2023CNPq ProductivityNational Oncology Care Support Program (PRONON) and CNPq 444217/2023-1Public Ministry of Labor Campinas (Research, Prevention, and Education of Occupational Cancer)São Paulo Research Foundation FAPESP-2021/07957-5
6 · The paper itself

Abstract

backgroundConstitutional mismatch repair deficiency (CMMRD) is a rare disorder resulting from biallelic germline pathogenic variants in mismatch repair genes. This study described the molecular profile of two metachronous brain tumors and a patient-derived xenograft (PDX) from a Brazilian child with CMMRD.

methodsAfter PDX development, methylation array, whole exome sequencing, and NanoString techniques were applied to describe the genetic landscape of CMMRD.

resultsA 6½-year-old girl was diagnosed with Sonic Hedgehog (SHH)-activated medulloblastoma and somatic TP53-mutant. After surgery and radiochemotherapy, she remained free of disease progression. At 10 years and 3 months, she developed a diffuse pediatric-type high-grade glioma (dpHGG). The child had a family history of cancer, and subsequent investigation revealed a biallelic germline variant on MSH6 (c.3556+1G>A) with the absence of protein expression in both normal and tumor tissue. A PDX model of the dpHGG was developed. The methylation profile confirmed the diagnosis of both brain tumors and PDX, refining the classification of dpHGG, Rtk1 subtype, subclass A, with an actionable alteration on Platelet-derived growth factor receptor A (PDGFRA). Exome analysis showed high tumor mutational burden, with 3019, 540, and 1049 pathogenic variants in the medulloblastoma, dpHGG, and PDX, respectively. Only the medulloblastoma exhibited microsatellite instability. The CD24, CD47, and CD276 immune checkpoints had elevated messenger RNA levels, yet no programmed death ligand 1 expression was observed in CMMRD-derived tumors.

conclusionWe report an extensive molecular profile of a CMMRD patient, and the developed PDX model can be applied to explore new therapeutic approaches for CMMRD-associated brain tumors.

Indexed as

Brain NeoplasmsDNA-Binding ProteinsNeoplastic Syndromes, HereditaryAnimalsCerebellar NeoplasmsChildColorectal NeoplasmsDisease Models, AnimalFemaleHumansMedulloblastomaDNA-Binding ProteinsG-T mismatch-binding proteinBrazilconstitutional mismatch repair deficiencyexomehigh‐grade gliomamedulloblastomaMSH6

Identifiers

PMID40880425
PMCPMC12746185

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.