Evidence map›Paper›PMID 40880130›Full record

ArticleFEMS microbiology ecology2025

Impact of pH and salinity fluctuations on oxidation of Fe(II) by nitrate-reducing microorganisms enriched from the reduced tidal sediment of an extreme acidic river (Río Tinto, Spain).

Martina Bottaro, Sergey Abramov, Ricardo Amils, Daniel Straub, Sebastian Kühnel, Marie Mollenkopf, Sara Kleindienst, Martin Obst, Andreas Kappler

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Editorial: Microbial Electron Transport.FEMS microbiology ecology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Martina BottaroGeomicrobiology, Department of Geosciences, University of Tübingen, 72076, Germany.
Sergey AbramovInstitute for Sanitary Engineering, Water Quality and Solid Waste Management, University of Stuttgart, 70569, Germany.
Ricardo AmilsCentro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, 28049, Spain.
Daniel StraubQuantitative Biology Center (QBiC), University of Tübingen, 72076,Germany.
Sebastian KühnelGeomicrobiology, Department of Geosciences, University of Tübingen, 72076, Germany.
Marie MollenkopfGeomicrobiology, Department of Geosciences, University of Tübingen, 72076, Germany.
Sara KleindienstInstitute for Sanitary Engineering, Water Quality and Solid Waste Management, University of Stuttgart, 70569, Germany.ORCID 0000-0001-8304-9149
Martin ObstExperimentelle Biogeochemie, BayCEER, University of Bayreuth, 95448, Germany.
Andreas KapplerGeomicrobiology, Department of Geosciences, University of Tübingen, 72076, Germany.ORCID 0000-0002-3558-9500

Funding

DFG 390838134
6 · The paper itself

Abstract

Nitrate reduction coupled to Fe(II) oxidation (NRFeOx) contributes to Fe cycling in the estuarian sediments of the Río Tinto river (Huelva, Spain). However, it is not yet known (i) whether and which NRFeOx microorganisms can be enriched from the reduced sediment layer and (ii) how in situ pH and salinity fluctuations affect NRFeOx. Therefore, we (i) used two different approaches, such as microcosm experiments (sediment amended with either NO3-/Fe2+aq or acetate/NO3-/Fe2+aq) and enrichment cultures (medium amended with acetate/NO3-/Fe2+aq) to enrich NRFeOx microorganisms to (ii) test their salinity and pH tolerance under simulated high tide and low tide conditions. We found that different microorganisms such as Thiobacillus (up to 9.7 ± 5.8% DNA-based 16S rRNA gene abundance) and Denitromonas (83.6% DNA-based 16S rRNA gene abundance) were contributing to NRFeOx in the microcosm experiments and enrichment culture approach, respectively. The strong buffering capacity of the native sediment and the presence of additional organic carbon as acetate can favor NRFeOx microorganisms during acidic water influx (low tide) events. The ∼100% conversion of NO3- to NO₂- under high tide conditions was observed both in the enrichment cultures and microcosm experiment when acetate was added suggesting the chemodenitrification may be the primary Fe(II) oxidation pathway under salty conditions.

Indexed as

BacteriaFerrous CompoundsGeologic SedimentsIronNitratesRiversSalinityDNA, BacterialHydrogen-Ion ConcentrationOxidation-ReductionPhylogenyRNA, Ribosomal, 16SSpainDNA, BacterialFerrous CompoundsIronNitratesRNA, Ribosomal, 16SDenitromonasmicrobial community of the reduced sediment layerNRFeOx microorganismsRío Tinto tidal sedimentsThiobacillus

Identifiers

PMID40880130
PMCPMC12475565

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.