Evidence map›Paper›PMID 40877157›Full record

ArticleIn vivo (Athens, Greece)

Transcriptome Analysis of the Effects of X-Ray Radiotherapy on Non-small-cell Lung Cancer Using Next-generation Sequencing.

Serhat Aras, Tuğba Kul Köprülü, Burçin Erkal Çam, Jülide Balkan, Esra Erdem, Esra Çikler, Altan Kara

Abstract read
In one paragraph

Article in In vivo (Athens, Greece). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Serhat ArasDepartment of Radiation Oncology, Haydarpasa Numune Training and Research Hospital, University of Health Sciences, Istanbul, Türkiye; serhat.aras@sbu.edu.tr.
Tuğba Kul KöprülüExperimental Medicine Application and Research Center, University of Health Sciences, Istanbul, Türkiye.
Burçin Erkal ÇamDepartment of Molecular Biology and Genetics, Faculty of Arts and Sciences, Yıldız Technical University, Istanbul, Türkiye.
Jülide BalkanDepartment of Molecular Medicine, Hamidiye Institute of Health Sciences, University of Health Sciences, Istanbul, Türkiye.
Esra ErdemDepartment of Histology and Embryology, Hamidiye Faculty of Medicine, University of Health Sciences, Istanbul, Türkiye.
Esra ÇiklerDepartment of Histology and Embryology, Hamidiye Faculty of Medicine, University of Health Sciences, Istanbul, Türkiye.
Altan KaraGenalyse Genetic Analysis and Reporting Ltd., Istanbul, Türkiye.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

aimThis study investigated the acute effects of flattening filter (FF) and flattening filter-free (FFF) beams on gene expression in non-small-cell lung cancer (NSCLC). MATERIALS AND

methodsThirty-six adult athymic nude mice were divided into five groups. The control group did not undergo any radiotherapy or treatment procedures, whereas in the lung cancer (LCa) group, a cancer model was created but not irradiated. LCa models received 20 Gy radiotherapy with FF at 400 MU/min, or with FFF at 1,000 or 1,800 MU/min dose rates. The mice were irradiated 20 days after A549 cancer cell-line implantation and sacrificed 48 h after irradiation for genetic analysis.

resultsTwelve genes were identified as being common across all radiotherapy groups. The expression of most of these genes changed as the dose rate increased. Seven of these genes were also common to the LCa and control groups. Three genes down-regulated in the untreated cancer group showed increased expression with higher dose rates in treated groups. Significant differences were observed in glutamatergic synapse, actin cytoskeleton regulation, and steroid synthesis in FF-400 and FFF-1000. The FFF-1800 group exhibited significant changes in RNA transport, actin cytoskeleton regulation, and phagosome-associated pathways.

conclusionFFF beams induced more extensive and pronounced gene-expression changes compared to FF beams in NSCLC.

Indexed as

Carcinoma, Non-Small-Cell LungGene Expression ProfilingGene Expression Regulation, NeoplasticHigh-Throughput Nucleotide SequencingLung NeoplasmsTranscriptomeA549 CellsAnimalsCell Line, TumorDisease Models, AnimalHumansMiceXenograft Model Antitumor AssaysX-Raysflattering filterflattering filter freeLung cancernext-generation sequencingradiotherapyRNA sequencing

Identifiers

PMID40877157
PMCPMC12396078

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.